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Source-faithful physiology lab for Thomas, 2000. Public controls and outputs are mapped to real source symbols for source-model physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_f_avr_glu",
"label": "Initial F Avr Glu",
"maps_to": "physiology_cellml_thomas_2000_256_model.initial_f_avr_glu",
"description": "Initial value for F Avr Glu. Maps to source symbol `F_AVR_GLU`. Units: pmol_min. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"pmol_min"
]
},
{
"name": "initial_f_avr_lac",
"label": "Initial F Avr Lac",
"maps_to": "physiology_cellml_thomas_2000_256_model.initial_f_avr_lac",
"description": "Initial value for F Avr Lac. Maps to source symbol `F_AVR_LAC`. Units: pmol_min. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"pmol_min"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_thomas_2000_256_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_thomas_2000_256_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_thomas_2000_256_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_thomas_2000_256_model.variable_labels"
},
{
"name": "f_avr_glu",
"label": "F Avr Glu",
"maps_to": "physiology_cellml_thomas_2000_256_model.f_avr_glu",
"description": "F Avr Glu. Maps to source symbol `F_AVR_GLU`. Units: pmol_min. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "f_avr_lac",
"label": "F Avr Lac",
"maps_to": "physiology_cellml_thomas_2000_256_model.f_avr_lac",
"description": "F Avr Lac. Maps to source symbol `F_AVR_LAC`. Units: pmol_min. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "f_avr_v",
"label": "F Avr V",
"maps_to": "physiology_cellml_thomas_2000_256_model.f_avr_v",
"description": "F Avr V. Maps to source symbol `F_AVR_v`. Units: nl_min. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "f_dvr_glu",
"label": "F Dvr Glu",
"maps_to": "physiology_cellml_thomas_2000_256_model.f_dvr_glu",
"description": "F Dvr Glu. Maps to source symbol `F_DVR_GLU`. Units: pmol_min. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "f_dvr_lac",
"label": "F Dvr Lac",
"maps_to": "physiology_cellml_thomas_2000_256_model.f_dvr_lac",
"description": "F Dvr Lac. Maps to source symbol `F_DVR_LAC`. Units: pmol_min. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "f_dvr_v",
"label": "F Dvr V",
"maps_to": "physiology_cellml_thomas_2000_256_model.f_dvr_v",
"description": "F Dvr V. Maps to source symbol `F_DVR_v`. Units: nl_min. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Thomas2000 - Mathematical Inner Medullary Lactate Production Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_thomas_2000_256_model",
"parameters": {
"model_path": "data/thomas_2000.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_thomas_2000_256_model_state"
],
"from": "physiology_cellml_thomas_2000_256_model.state"
},
{
"to": [
"visualisation.physiology_cellml_thomas_2000_256_model_summary"
],
"from": "physiology_cellml_thomas_2000_256_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_thomas_2000_256_model_trajectory"
],
"from": "physiology_cellml_thomas_2000_256_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_thomas_2000_256_model_variable_labels"
],
"from": "physiology_cellml_thomas_2000_256_model.variable_labels"
}
],
"package": "thomas2000-mathematical-inner-medullary-lactate-production",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Thomas, 2000. Public controls and outputs are mapped to real source symbols for source-model physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagethomas2000-mathematical-inner-medullary-lactate-production
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother