Physiome c98 - Serca Physics Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_q_1",
        "label": "Initial Model State Q 1 (source q_1)",
        "maps_to": "physiology_cellml_serca_the_physics_of_physiology_c98_model.initial_model_state_q_1",
        "description": "Initial value for Model State Q 1 (source q_1). Maps to source symbol `q_1`. Units: fmol. Naming evidence: source symbol is too ambiguous for a stronger public label.",
        "accepted_units": [
          "fmol"
        ]
      },
      {
        "name": "initial_model_state_q_2",
        "label": "Initial Model State Q 2 (source q_2)",
        "maps_to": "physiology_cellml_serca_the_physics_of_physiology_c98_model.initial_model_state_q_2",
        "description": "Initial value for Model State Q 2 (source q_2). Maps to source symbol `q_2`. Units: fmol. Naming evidence: source symbol is too ambiguous for a stronger public label.",
        "accepted_units": [
          "fmol"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_serca_the_physics_of_physiology_c98_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_serca_the_physics_of_physiology_c98_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_serca_the_physics_of_physiology_c98_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_serca_the_physics_of_physiology_c98_model.variable_labels"
      },
      {
        "name": "atpi",
        "label": "Atpi",
        "maps_to": "physiology_cellml_serca_the_physics_of_physiology_c98_model.atpi",
        "description": "Atpi. Maps to source symbol `ATPi`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "mu_atpi",
        "label": "Mu Atpi",
        "maps_to": "physiology_cellml_serca_the_physics_of_physiology_c98_model.mu_atpi",
        "description": "Mu Atpi. Maps to source symbol `mu_ATPi`. Units: J_per_mol. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "adpi",
        "label": "Adpi",
        "maps_to": "physiology_cellml_serca_the_physics_of_physiology_c98_model.adpi",
        "description": "Adpi. Maps to source symbol `ADPi`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "mu_adpi",
        "label": "Mu Adpi",
        "maps_to": "physiology_cellml_serca_the_physics_of_physiology_c98_model.mu_adpi",
        "description": "Mu Adpi. Maps to source symbol `mu_ADPi`. Units: J_per_mol. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "k_atpi",
        "label": "K Atpi",
        "maps_to": "physiology_cellml_serca_the_physics_of_physiology_c98_model.k_atpi",
        "description": "K Atpi. Maps to source symbol `K_ATPi`. Units: per_fmol_1. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "q_atpi",
        "label": "Q Atpi",
        "maps_to": "physiology_cellml_serca_the_physics_of_physiology_c98_model.q_atpi",
        "description": "Q Atpi. Maps to source symbol `q_ATPi`. Units: fmol. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Physiome c98 - Serca Physics Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "physiology_cellml_serca_the_physics_of_physiology_c98_model",
      "parameters": {
        "model_path": "data/BG_SERCA.cellml",
        "integration_step": 0.01
      }
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_serca_the_physics_of_physiology_c98_model_state"
      ],
      "from": "physiology_cellml_serca_the_physics_of_physiology_c98_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_serca_the_physics_of_physiology_c98_model_summary"
      ],
      "from": "physiology_cellml_serca_the_physics_of_physiology_c98_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_serca_the_physics_of_physiology_c98_model_trajectory"
      ],
      "from": "physiology_cellml_serca_the_physics_of_physiology_c98_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_serca_the_physics_of_physiology_c98_model_variable_labels"
      ],
      "from": "physiology_cellml_serca_the_physics_of_physiology_c98_model.variable_labels"
    }
  ],
  "package": "physiomec98-serca-physics",
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "version": "1.0.0",
  "description": "Source-faithful physiology lab for SERCA - The Physics of Physiology. Public controls and outputs are mapped to real source symbols for calcium handling.",
  "schema_version": "2.0"
}