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Source-faithful physiology lab for Phillips 2008. Public controls and outputs are mapped to real source symbols for source-model physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_model_state_h",
"label": "Initial Model State H (source H)",
"maps_to": "physiology_cellml_phillips_2008_phillips2008_model.initial_model_state_h",
"description": "Initial value for Model State H (source H). Maps to source symbol `H`. Units: nM. Naming evidence: source symbol is too ambiguous for a stronger public label.",
"accepted_units": [
"nM"
]
},
{
"name": "initial_model_state_vm",
"label": "Initial Model State Vm (source Vm)",
"maps_to": "physiology_cellml_phillips_2008_phillips2008_model.initial_model_state_vm",
"description": "Initial value for Model State Vm (source Vm). Maps to source symbol `Vm`. Units: mV. Naming evidence: source symbol is too ambiguous for a stronger public label.",
"accepted_units": [
"mV"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_phillips_2008_phillips2008_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_phillips_2008_phillips2008_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_phillips_2008_phillips2008_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_phillips_2008_phillips2008_model.variable_labels"
},
{
"name": "model_state_h",
"label": "Model State H (source H)",
"maps_to": "physiology_cellml_phillips_2008_phillips2008_model.model_state_h",
"description": "Model State H (source H). Maps to source symbol `H`. Units: nM. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "model_state_vm",
"label": "Model State Vm (source Vm)",
"maps_to": "physiology_cellml_phillips_2008_phillips2008_model.model_state_vm",
"description": "Model State Vm (source Vm). Maps to source symbol `Vm`. Units: mV. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "model_state_vv",
"label": "Model State Vv (source Vv)",
"maps_to": "physiology_cellml_phillips_2008_phillips2008_model.model_state_vv",
"description": "Model State Vv (source Vv). Maps to source symbol `Vv`. Units: mV. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "alpha",
"label": "Alpha",
"maps_to": "physiology_cellml_phillips_2008_phillips2008_model.alpha",
"description": "Alpha. Maps to source symbol `alpha`. Units: hour. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "chi",
"label": "Chi",
"maps_to": "physiology_cellml_phillips_2008_phillips2008_model.chi",
"description": "Chi. Maps to source symbol `chi`. Units: hour. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "model_parameter_c",
"label": "Model Parameter C (source C)",
"maps_to": "physiology_cellml_phillips_2008_phillips2008_model.model_parameter_c",
"description": "Model Parameter C (source C). Maps to source symbol `C`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
}
]
},
"title": "Phillips2008 - Sleep Deprivation Quantitative Physiologically Phillips2008 Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_phillips_2008_phillips2008_model",
"parameters": {
"model_path": "data/phillips_baseline_2008.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_phillips_2008_phillips2008_model_state"
],
"from": "physiology_cellml_phillips_2008_phillips2008_model.state"
},
{
"to": [
"visualisation.physiology_cellml_phillips_2008_phillips2008_model_summary"
],
"from": "physiology_cellml_phillips_2008_phillips2008_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_phillips_2008_phillips2008_model_trajectory"
],
"from": "physiology_cellml_phillips_2008_phillips2008_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_phillips_2008_phillips2008_model_variable_labels"
],
"from": "physiology_cellml_phillips_2008_phillips2008_model.variable_labels"
}
],
"package": "phillips2008-sleep-deprivation-quantitative-physiologic-2936982a",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Phillips 2008. Public controls and outputs are mapped to real source symbols for source-model physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagephillips2008-sleep-deprivation-quantitative-physiologic-2936982a
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother