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Source-faithful physiology lab for McIntyre, Richardson, Grill, 2001. Public controls and outputs are mapped to real source symbols for electrophysiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_membrane_voltage",
"label": "Initial Membrane Voltage",
"maps_to": "physiology_cellml_mcintyre_richardson_grill_2001_5f5_model.initial_membrane_voltage",
"description": "Initial value for Membrane Voltage. Maps to source symbol `V_m`. Units: mV. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"mV"
]
},
{
"name": "initial_sodium_h_gate",
"label": "Initial Sodium H Gate",
"maps_to": "physiology_cellml_mcintyre_richardson_grill_2001_5f5_model.initial_sodium_h_gate",
"description": "Initial value for Sodium H Gate. Maps to source symbol `h`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"dimensionless"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_mcintyre_richardson_grill_2001_5f5_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_mcintyre_richardson_grill_2001_5f5_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_mcintyre_richardson_grill_2001_5f5_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_mcintyre_richardson_grill_2001_5f5_model.variable_labels"
},
{
"name": "membrane_voltage",
"label": "Membrane Voltage",
"maps_to": "physiology_cellml_mcintyre_richardson_grill_2001_5f5_model.membrane_voltage",
"description": "Membrane Voltage. Maps to source symbol `V_m`. Units: mV. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "sodium_reversal_potential",
"label": "Sodium Reversal Potential",
"maps_to": "physiology_cellml_mcintyre_richardson_grill_2001_5f5_model.sodium_reversal_potential",
"description": "Sodium Reversal Potential. Maps to source symbol `E_Na`. Units: mV. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "potassium_reversal_potential",
"label": "Potassium Reversal Potential",
"maps_to": "physiology_cellml_mcintyre_richardson_grill_2001_5f5_model.potassium_reversal_potential",
"description": "Potassium Reversal Potential. Maps to source symbol `E_K`. Units: mV. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "sodium_current",
"label": "Sodium Current",
"maps_to": "physiology_cellml_mcintyre_richardson_grill_2001_5f5_model.sodium_current",
"description": "Sodium Current. Maps to source symbol `i_Nap`. Units: mA_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "sodium_current_i_naf",
"label": "Sodium Current I Naf",
"maps_to": "physiology_cellml_mcintyre_richardson_grill_2001_5f5_model.sodium_current_i_naf",
"description": "Sodium Current I Naf. Maps to source symbol `i_Naf`. Units: mA_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "potassium_current",
"label": "Potassium Current",
"maps_to": "physiology_cellml_mcintyre_richardson_grill_2001_5f5_model.potassium_current",
"description": "Potassium Current. Maps to source symbol `i_Kf`. Units: mA_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Mc2001 - Intyre Richardson Grill Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_mcintyre_richardson_grill_2001_5f5_model",
"parameters": {
"model_path": "data/mcintyre_richardson_grill_model_2001.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_mcintyre_richardson_grill_2001_5f5_model_state"
],
"from": "physiology_cellml_mcintyre_richardson_grill_2001_5f5_model.state"
},
{
"to": [
"visualisation.physiology_cellml_mcintyre_richardson_grill_2001_5f5_model_summary"
],
"from": "physiology_cellml_mcintyre_richardson_grill_2001_5f5_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_mcintyre_richardson_grill_2001_5f5_model_trajectory"
],
"from": "physiology_cellml_mcintyre_richardson_grill_2001_5f5_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_mcintyre_richardson_grill_2001_5f5_model_variable_labels"
],
"from": "physiology_cellml_mcintyre_richardson_grill_2001_5f5_model.variable_labels"
}
],
"package": "mc2001-intyre-richardson-grill",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for McIntyre, Richardson, Grill, 2001. Public controls and outputs are mapped to real source symbols for electrophysiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagemc2001-intyre-richardson-grill
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother