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Clean Biosimulant lab for systems signaling model: Tyson2003_Substrate_Depletion_Osc. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_source_defined_e_state",
"label": "Initial source-defined E state",
"maps_to": "signaling_sbml_tyson2003_substrate_depletion_osc_biomd0000000307_model.initial_source_defined_e_state",
"description": "Initial level of source-defined E state. Maps to SBML symbol `E`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_source_defined_ep_state",
"label": "Initial source-defined EP state",
"maps_to": "signaling_sbml_tyson2003_substrate_depletion_osc_biomd0000000307_model.initial_source_defined_ep_state",
"description": "Initial level of source-defined EP state. Maps to SBML symbol `Ep`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_source_defined_s_state",
"label": "Initial source-defined S state",
"maps_to": "signaling_sbml_tyson2003_substrate_depletion_osc_biomd0000000307_model.initial_source_defined_s_state",
"description": "Initial level of source-defined S state. Maps to SBML symbol `S`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "source_defined_r_state",
"label": "Source Defined R State",
"maps_to": "signaling_sbml_tyson2003_substrate_depletion_osc_biomd0000000307_model.source_defined_r_state",
"description": "Source Defined R State. Maps to SBML symbol `R` and is emitted in native SBML units."
},
{
"name": "response_node_x",
"label": "Response Node X",
"maps_to": "signaling_sbml_tyson2003_substrate_depletion_osc_biomd0000000307_model.response_node_x",
"description": "Response Node X. Maps to SBML symbol `X` and is emitted in native SBML units."
},
{
"name": "source_defined_s_state",
"label": "Source Defined S State",
"maps_to": "signaling_sbml_tyson2003_substrate_depletion_osc_biomd0000000307_model.source_defined_s_state",
"description": "Source Defined S State. Maps to SBML symbol `S` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_tyson2003_substrate_depletion_osc_biomd0000000307_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_tyson2003_substrate_depletion_osc_biomd0000000307_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_tyson2003_substrate_depletion_osc_biomd0000000307_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"cellular-signaling"
],
"title": "Tyson2003_Substrate_Depletion_Osc Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_tyson2003_substrate_depletion_osc_biomd0000000307_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_tyson2003_substrate_depletion_osc_biomd0000000307_model_state"
],
"from": "signaling_sbml_tyson2003_substrate_depletion_osc_biomd0000000307_model.state"
},
{
"to": [
"visualisation.signaling_sbml_tyson2003_substrate_depletion_osc_biomd0000000307_model_summary"
],
"from": "signaling_sbml_tyson2003_substrate_depletion_osc_biomd0000000307_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_tyson2003_substrate_depletion_osc_biomd0000000307_model_species_labels"
],
"from": "signaling_sbml_tyson2003_substrate_depletion_osc_biomd0000000307_model.species_labels"
}
],
"package": "tyson2003-substrate-depletion-osc",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for systems signaling model: Tyson2003_Substrate_Depletion_Osc. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagetyson2003-substrate-depletion-osc
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicellular-signalingvisualisationother