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This is the Unlabelled model as described in: Simulation of the Pentose Cycle in Lactating Rat Mammary Gland Haut MJ , London JW , Garfinkel D Biochem J. It can be used to explore systemsbiology haut1974 pentose cycle rat model1004070000 dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_glucose_outside_cell",
"label": "Initial Glucose Outside Cell",
"maps_to": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.initial_glucose_outside_cell",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `glucose_outside_cell`."
},
{
"name": "initial_glucose_6_phosphate",
"label": "Initial Glucose 6 Phosphate",
"maps_to": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.initial_glucose_6_phosphate",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `glucose_6_phosphate`."
},
{
"name": "initial_nadp",
"label": "Initial Nadp",
"maps_to": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.initial_nadp",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NADP`."
},
{
"name": "initial_glucose_hexokinase",
"label": "Initial Glucose Hexokinase",
"maps_to": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.initial_glucose_hexokinase",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `glucose_hexokinase`."
},
{
"name": "initial_glucose_inside_cell",
"label": "Initial Glucose Inside Cell",
"maps_to": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.initial_glucose_inside_cell",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `glucose_inside_cell`."
},
{
"name": "initial_nadph",
"label": "Initial Nadph",
"maps_to": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.initial_nadph",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NADPH`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.species_labels"
},
{
"name": "glucose_outside_cell",
"maps_to": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.glucose_outside_cell"
},
{
"name": "glucose_6_phosphate",
"maps_to": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.glucose_6_phosphate"
},
{
"name": "nadp",
"maps_to": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.nadp"
},
{
"name": "glucose_hexokinase",
"maps_to": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.glucose_hexokinase"
},
{
"name": "glucose_inside_cell",
"maps_to": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.glucose_inside_cell"
},
{
"name": "nadph",
"maps_to": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.nadph"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Haut1974 Pentose Cycle Rat Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model_state"
],
"from": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model_summary"
],
"from": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model_species_labels"
],
"from": "systemsbiology_sbml_haut1974_pentose_cycle_rat_model1004070000_model.species_labels"
}
],
"package": "haut1974-pentose-cycle-rat",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "This is the Unlabelled model as described in: Simulation of the Pentose Cycle in Lactating Rat Mammary Gland Haut MJ , London JW , Garfinkel D Biochem J. It can be used to explore systemsbiology haut1974 pentose cycle rat model1004070000 dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagehaut1974-pentose-cycle-rat
Created2026-05-17
Updated2026-06-13
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother