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This is a new version of a liver iron model (original from Mitchell 2013 BIOMD0000000498) with updated kinetics of ferritin iron storage. It uses MODEL2211030001 as a substitute for the original ferri.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_iron_metabolism_state_1",
"units": "native SBML value",
"default": 1.13750420250257e-8,
"maps_to": "metabolism_sbml_masison2022_liver_iron_metabolism_with_updated_f_model2211030002_model.initial_iron_metabolism_state_1",
"description": "Initial condition for iron metabolism state 1. Maps to bundled SBML symbol `species_7`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
},
{
"name": "initial_iron_metabolism_state_2",
"units": "native SBML value",
"default": 5.53114277751551e-11,
"maps_to": "metabolism_sbml_masison2022_liver_iron_metabolism_with_updated_f_model2211030002_model.initial_iron_metabolism_state_2",
"description": "Initial condition for iron metabolism state 2. Maps to bundled SBML symbol `species_1`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
},
{
"name": "initial_iron_metabolism_state_3",
"units": "native SBML value",
"default": 4.81985997445553e-9,
"maps_to": "metabolism_sbml_masison2022_liver_iron_metabolism_with_updated_f_model2211030002_model.initial_iron_metabolism_state_3",
"description": "Initial condition for iron metabolism state 3. Maps to bundled SBML symbol `species_5`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
},
{
"name": "initial_iron_metabolism_state_4",
"units": "native SBML value",
"default": 0.00000491004767574587,
"maps_to": "metabolism_sbml_masison2022_liver_iron_metabolism_with_updated_f_model2211030002_model.initial_iron_metabolism_state_4",
"description": "Initial condition for iron metabolism state 4. Maps to bundled SBML symbol `species_2`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
},
{
"name": "initial_iron_metabolism_state_5",
"units": "native SBML value",
"default": 0.00000404747006186017,
"maps_to": "metabolism_sbml_masison2022_liver_iron_metabolism_with_updated_f_model2211030002_model.initial_iron_metabolism_state_5",
"description": "Initial condition for iron metabolism state 5. Maps to bundled SBML symbol `species_4`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
}
],
"outputs": [
{
"name": "iron_metabolism_state_1",
"maps_to": "metabolism_sbml_masison2022_liver_iron_metabolism_with_updated_f_model2211030002_model.iron_metabolism_state_1"
},
{
"name": "iron_metabolism_state_2",
"maps_to": "metabolism_sbml_masison2022_liver_iron_metabolism_with_updated_f_model2211030002_model.iron_metabolism_state_2"
},
{
"name": "iron_metabolism_state_3",
"maps_to": "metabolism_sbml_masison2022_liver_iron_metabolism_with_updated_f_model2211030002_model.iron_metabolism_state_3"
},
{
"name": "iron_metabolism_state_4",
"maps_to": "metabolism_sbml_masison2022_liver_iron_metabolism_with_updated_f_model2211030002_model.iron_metabolism_state_4"
},
{
"name": "iron_metabolism_state_5",
"maps_to": "metabolism_sbml_masison2022_liver_iron_metabolism_with_updated_f_model2211030002_model.iron_metabolism_state_5"
},
{
"name": "observable_values",
"maps_to": "metabolism_sbml_masison2022_liver_iron_metabolism_with_updated_f_model2211030002_model.observable_values"
},
{
"name": "run_summary",
"maps_to": "metabolism_sbml_masison2022_liver_iron_metabolism_with_updated_f_model2211030002_model.run_summary"
},
{
"name": "observable_labels",
"maps_to": "metabolism_sbml_masison2022_liver_iron_metabolism_with_updated_f_model2211030002_model.observable_labels"
}
]
},
"title": "Masison2022 - Liver Iron Metabolism with updated ferritin Lab",
"models": [
{
"path": "models/core",
"alias": "metabolism_sbml_masison2022_liver_iron_metabolism_with_updated_f_model2211030002_model",
"parameters": {
"model_path": "data/MODEL2211030002.xml",
"integration_step": 0.1
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.metabolism_sbml_masison2022_liver_iron_metabolism_with_updated_f_model2211030002_model_observable_values"
],
"from": "metabolism_sbml_masison2022_liver_iron_metabolism_with_updated_f_model2211030002_model.observable_values"
},
{
"to": [
"visualisation.metabolism_sbml_masison2022_liver_iron_metabolism_with_updated_f_model2211030002_model_run_summary"
],
"from": "metabolism_sbml_masison2022_liver_iron_metabolism_with_updated_f_model2211030002_model.run_summary"
},
{
"to": [
"visualisation.metabolism_sbml_masison2022_liver_iron_metabolism_with_updated_f_model2211030002_model_observable_labels"
],
"from": "metabolism_sbml_masison2022_liver_iron_metabolism_with_updated_f_model2211030002_model.observable_labels"
}
],
"package": "masison2022-liver-iron-metabolism-with-updated-ferritin",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"version": "1.0.0",
"description": "This is a new version of a liver iron model (original from Mitchell 2013 BIOMD0000000498) with updated kinetics of ferritin iron storage. It uses MODEL2211030001 as a substitute for the original ferri.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packagemasison2022-liver-iron-metabolism-with-updated-ferritin
Created2026-05-15
Updated2026-06-13
biomodels_ebifaithfulmetabolismodesbmltelluriumvisualisationother