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Source-faithful physiology lab for Wolf2001_Respiratory_Oscillations. Public controls and outputs are mapped to real source symbols for oscillatory physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_atp",
"label": "Initial ATP",
"maps_to": "physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model.initial_atp",
"description": "Initial value for ATP. Maps to source symbol `A3c`. Units: substance. Naming evidence: source metadata names `A3c` as `ATP`.",
"accepted_units": [
"substance"
]
},
{
"name": "initial_atp_mit",
"label": "Initial ATP Mit",
"maps_to": "physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model.initial_atp_mit",
"description": "Initial value for ATP Mit. Maps to source symbol `A3m`. Units: substance. Naming evidence: source metadata names `A3m` as `ATP_mit`.",
"accepted_units": [
"substance"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model.trajectory"
},
{
"name": "species_labels",
"label": "Observable Labels",
"maps_to": "physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model.species_labels"
},
{
"name": "atp",
"label": "ATP",
"maps_to": "physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model.atp",
"description": "ATP. Maps to source symbol `A3c`. Units: substance. Naming evidence: source metadata names `A3c` as `ATP`."
},
{
"name": "atp_mit",
"label": "ATP Mit",
"maps_to": "physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model.atp_mit",
"description": "ATP Mit. Maps to source symbol `A3m`. Units: substance. Naming evidence: source metadata names `A3m` as `ATP_mit`."
},
{
"name": "adp",
"label": "ADP",
"maps_to": "physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model.adp",
"description": "ADP. Maps to source symbol `A2c`. Units: substance. Naming evidence: source metadata names `A2c` as `ADP`."
},
{
"name": "adp_mit",
"label": "ADP Mit",
"maps_to": "physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model.adp_mit",
"description": "ADP Mit. Maps to source symbol `A2m`. Units: substance. Naming evidence: source metadata names `A2m` as `ADP_mit`."
},
{
"name": "ac_co_a",
"label": "Ac Co A",
"maps_to": "physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model.ac_co_a",
"description": "Ac Co A. Maps to source symbol `aco`. Units: substance. Naming evidence: source metadata names `aco` as `AcCoA`."
},
{
"name": "aps",
"label": "Aps",
"maps_to": "physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model.aps",
"description": "Aps. Maps to source symbol `aps`. Units: substance. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Wolf2001 - Respiratory Oscillations Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model",
"parameters": {
"model_path": "data/BIOMD0000000090.xml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model_state"
],
"from": "physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model.state"
},
{
"to": [
"visualisation.physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model_summary"
],
"from": "physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model.summary"
},
{
"to": [
"visualisation.physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model_trajectory"
],
"from": "physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model.trajectory"
},
{
"to": [
"visualisation.physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model_species_labels"
],
"from": "physiology_sbml_wolf2001_respiratory_oscillations_biomd0000000090_model.species_labels"
}
],
"package": "wolf2001-respiratory-oscillations",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Wolf2001_Respiratory_Oscillations. Public controls and outputs are mapped to real source symbols for oscillatory physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagewolf2001-respiratory-oscillations
Created2026-05-23
Updated2026-06-13
physiologysbmlbiomodels_ebifaithfulvisualisationother