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This mathematical model of the dynamics between tumor, virus and virus-specific CTL populations is described by the publication:Wodarz D. 'Viruses as antitumor weapons: defining conditions for tumor r.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_uninfected_tumor_cells",
"label": "Uninfected tumor cells",
"units": "native SBML value",
"default": 0.01,
"maps_to": "oncology_sbml_wodarz2001_viruses_as_antitumor_weapons_biomd0000001043_model.initial_uninfected_tumor_cells",
"description": "Initial Uninfected tumor cells. Sets the initial value of bundled SBML symbol `uninfected_tumor_cells`."
},
{
"name": "initial_infected_tumor_cells",
"label": "Infected tumor cells",
"units": "native SBML value",
"default": 0.0001,
"maps_to": "oncology_sbml_wodarz2001_viruses_as_antitumor_weapons_biomd0000001043_model.initial_infected_tumor_cells",
"description": "Initial Infected tumor cells. Sets the initial value of bundled SBML symbol `infected_tumor_cells`."
},
{
"name": "initial_virus_specific_ctls",
"label": "Virus specific CTLs",
"units": "native SBML value",
"default": 0,
"maps_to": "oncology_sbml_wodarz2001_viruses_as_antitumor_weapons_biomd0000001043_model.initial_virus_specific_ctls",
"description": "Initial Virus specific CTLs. Sets the initial value of bundled SBML symbol `virus_specific_CTLs`."
}
],
"outputs": [
{
"name": "uninfected_tumor_cells",
"maps_to": "oncology_sbml_wodarz2001_viruses_as_antitumor_weapons_biomd0000001043_model.uninfected_tumor_cells",
"description": "Uninfected tumor cells observable. Maps to SBML symbol `uninfected_tumor_cells`."
},
{
"name": "infected_tumor_cells",
"maps_to": "oncology_sbml_wodarz2001_viruses_as_antitumor_weapons_biomd0000001043_model.infected_tumor_cells",
"description": "Infected tumor cells observable. Maps to SBML symbol `infected_tumor_cells`."
},
{
"name": "virus_specific_ctls",
"maps_to": "oncology_sbml_wodarz2001_viruses_as_antitumor_weapons_biomd0000001043_model.virus_specific_ctls",
"description": "Virus specific CTLs observable. Maps to SBML symbol `virus_specific_CTLs`."
},
{
"name": "state",
"maps_to": "oncology_sbml_wodarz2001_viruses_as_antitumor_weapons_biomd0000001043_model.state",
"description": "Full raw SBML observable record for reproducibility and downstream visualisation."
},
{
"name": "summary",
"maps_to": "oncology_sbml_wodarz2001_viruses_as_antitumor_weapons_biomd0000001043_model.summary",
"description": "Change and peak summary across the simulated SBML observables."
},
{
"name": "species_labels",
"maps_to": "oncology_sbml_wodarz2001_viruses_as_antitumor_weapons_biomd0000001043_model.species_labels",
"description": "Mapping from selected raw SBML observable symbols to display labels."
}
]
},
"tags": [
"biomodels_ebi",
"curated",
"faithful",
"immunology",
"immunotherapy",
"microenvironment",
"oncology",
"physiology",
"sbml",
"systemsbiology",
"tumor-growth",
"virotherapy"
],
"title": "Wodarz2001 - Viruses as antitumor weapons Lab",
"models": [
{
"path": "models/core",
"alias": "oncology_sbml_wodarz2001_viruses_as_antitumor_weapons_biomd0000001043_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.oncology_sbml_wodarz2001_viruses_as_antitumor_weapons_biomd0000001043_model_state"
],
"from": "oncology_sbml_wodarz2001_viruses_as_antitumor_weapons_biomd0000001043_model.state"
},
{
"to": [
"visualisation.oncology_sbml_wodarz2001_viruses_as_antitumor_weapons_biomd0000001043_model_summary"
],
"from": "oncology_sbml_wodarz2001_viruses_as_antitumor_weapons_biomd0000001043_model.summary"
},
{
"to": [
"visualisation.oncology_sbml_wodarz2001_viruses_as_antitumor_weapons_biomd0000001043_model_species_labels"
],
"from": "oncology_sbml_wodarz2001_viruses_as_antitumor_weapons_biomd0000001043_model.species_labels"
}
],
"package": "wodarz2001-viruses-as-antitumor-weapons",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"version": "1.0.0",
"description": "This mathematical model of the dynamics between tumor, virus and virus-specific CTL populations is described by the publication:Wodarz D. 'Viruses as antitumor weapons: defining conditions for tumor r.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packagewodarz2001-viruses-as-antitumor-weapons
Created2026-05-16
Updated2026-06-13
biomodels_ebicuratedfaithfulimmunologyimmunotherapymicroenvironmentoncologyphysiologysbmlsystemsbiologytumor-growthvirotherapyvisualisationother