About lab
One published Lab
Build with this Lab. Run it anywhere.
Use the same immutable release locally or through managed cloud execution, with its exact version and provenance preserved.
Preparing exact examples…
Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_egf_egfr",
"label": "Initial EGF EGFR",
"maps_to": "signaling_sbml_kholodenko1999_egfr_signaling_biomd0000000048_model.initial_egf_egfr",
"description": "Initial level of EGF EGFR. Maps to SBML symbol `Ra`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_egf_egfr_2",
"label": "Initial EGF EGFR 2",
"maps_to": "signaling_sbml_kholodenko1999_egfr_signaling_biomd0000000048_model.initial_egf_egfr_2",
"description": "Initial level of EGF EGFR 2. Maps to SBML symbol `R2`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_egf_egfr_2_grb2_adapter_protein",
"label": "Initial EGF EGFR 2 Grb2 adapter protein",
"maps_to": "signaling_sbml_kholodenko1999_egfr_signaling_biomd0000000048_model.initial_egf_egfr_2_grb2_adapter_protein",
"description": "Initial level of EGF EGFR 2 Grb2 adapter protein. Maps to SBML symbol `RG`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "epidermal_growth_factor",
"label": "Epidermal Growth Factor",
"maps_to": "signaling_sbml_kholodenko1999_egfr_signaling_biomd0000000048_model.epidermal_growth_factor",
"description": "Epidermal Growth Factor. Maps to SBML symbol `EGF` and is emitted in native SBML units."
},
{
"name": "egfr",
"label": "EGFR",
"maps_to": "signaling_sbml_kholodenko1999_egfr_signaling_biomd0000000048_model.egfr",
"description": "EGFR. Maps to SBML symbol `R` and is emitted in native SBML units."
},
{
"name": "egf_egfr",
"label": "EGF EGFR",
"maps_to": "signaling_sbml_kholodenko1999_egfr_signaling_biomd0000000048_model.egf_egfr",
"description": "EGF EGFR. Maps to SBML symbol `Ra` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_kholodenko1999_egfr_signaling_biomd0000000048_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_kholodenko1999_egfr_signaling_biomd0000000048_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_kholodenko1999_egfr_signaling_biomd0000000048_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"egfr"
],
"title": "Kholodenko1999 - EGFR signaling Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_kholodenko1999_egfr_signaling_biomd0000000048_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_kholodenko1999_egfr_signaling_biomd0000000048_model_state"
],
"from": "signaling_sbml_kholodenko1999_egfr_signaling_biomd0000000048_model.state"
},
{
"to": [
"visualisation.signaling_sbml_kholodenko1999_egfr_signaling_biomd0000000048_model_summary"
],
"from": "signaling_sbml_kholodenko1999_egfr_signaling_biomd0000000048_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_kholodenko1999_egfr_signaling_biomd0000000048_model_species_labels"
],
"from": "signaling_sbml_kholodenko1999_egfr_signaling_biomd0000000048_model.species_labels"
}
],
"package": "kholodenko1999-egfr-signaling",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagekholodenko1999-egfr-signaling
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebiegfrvisualisationother