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This is a part of the model described in: A physiological model of cerebral blood flow control Murad Banaji, Ilias Tachtsidis, David Delpy, Stephen Baigent, Mathematical biosciences 2005 194:125-173;. It can be used to explore systemsbiology banaji2005 brain cell metabolism model4992089662 dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_sites_on_cellular_proteins_capable_of_binding_protons",
"label": "Initial Sites On Cellular Proteins Capable Of Binding Protons",
"maps_to": "systemsbiology_sbml_banaji2005_brain_cell_metabolism_model4992089662_model.initial_sites_on_cellular_proteins_capable_of_binding_protons",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Pbuf`."
},
{
"name": "initial_sites_on_cellular_proteins_bound_to_protons",
"label": "Initial Sites On Cellular Proteins Bound To Protons",
"maps_to": "systemsbiology_sbml_banaji2005_brain_cell_metabolism_model4992089662_model.initial_sites_on_cellular_proteins_bound_to_protons",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PbufH`."
},
{
"name": "initial_potassium_ion",
"label": "Initial Potassium Ion",
"maps_to": "systemsbiology_sbml_banaji2005_brain_cell_metabolism_model4992089662_model.initial_potassium_ion",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `_K`."
},
{
"name": "initial_sodium_ion",
"label": "Initial Sodium Ion",
"maps_to": "systemsbiology_sbml_banaji2005_brain_cell_metabolism_model4992089662_model.initial_sodium_ion",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `_eNa`."
},
{
"name": "initial_bicarbonate_ion",
"label": "Initial Bicarbonate Ion",
"maps_to": "systemsbiology_sbml_banaji2005_brain_cell_metabolism_model4992089662_model.initial_bicarbonate_ion",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `_mBiC`."
},
{
"name": "initial_bicarbonate_ion_2",
"label": "Initial Bicarbonate Ion 2",
"maps_to": "systemsbiology_sbml_banaji2005_brain_cell_metabolism_model4992089662_model.initial_bicarbonate_ion_2",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `_eBiC`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_banaji2005_brain_cell_metabolism_model4992089662_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_banaji2005_brain_cell_metabolism_model4992089662_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_banaji2005_brain_cell_metabolism_model4992089662_model.species_labels"
},
{
"name": "sites_on_cellular_proteins_capable_of_binding_protons",
"maps_to": "systemsbiology_sbml_banaji2005_brain_cell_metabolism_model4992089662_model.sites_on_cellular_proteins_capable_of_binding_protons"
},
{
"name": "sites_on_cellular_proteins_bound_to_protons",
"maps_to": "systemsbiology_sbml_banaji2005_brain_cell_metabolism_model4992089662_model.sites_on_cellular_proteins_bound_to_protons"
},
{
"name": "potassium_ion",
"maps_to": "systemsbiology_sbml_banaji2005_brain_cell_metabolism_model4992089662_model.potassium_ion"
},
{
"name": "sodium_ion",
"maps_to": "systemsbiology_sbml_banaji2005_brain_cell_metabolism_model4992089662_model.sodium_ion"
},
{
"name": "bicarbonate_ion",
"maps_to": "systemsbiology_sbml_banaji2005_brain_cell_metabolism_model4992089662_model.bicarbonate_ion"
},
{
"name": "bicarbonate_ion_2",
"maps_to": "systemsbiology_sbml_banaji2005_brain_cell_metabolism_model4992089662_model.bicarbonate_ion_2"
}
]
},
"tags": [
"metabolism",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Banaji2005 Brain Cell Metabolism Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_banaji2005_brain_cell_metabolism_model4992089662_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_banaji2005_brain_cell_metabolism_model4992089662_model_state"
],
"from": "systemsbiology_sbml_banaji2005_brain_cell_metabolism_model4992089662_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_banaji2005_brain_cell_metabolism_model4992089662_model_summary"
],
"from": "systemsbiology_sbml_banaji2005_brain_cell_metabolism_model4992089662_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_banaji2005_brain_cell_metabolism_model4992089662_model_species_labels"
],
"from": "systemsbiology_sbml_banaji2005_brain_cell_metabolism_model4992089662_model.species_labels"
}
],
"package": "banaji2005-brain-cell-metabolism",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "This is a part of the model described in: A physiological model of cerebral blood flow control Murad Banaji, Ilias Tachtsidis, David Delpy, Stephen Baigent, Mathematical biosciences 2005 194:125-173;. It can be used to explore systemsbiology banaji2005 brain cell metabolism model4992089662 dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagebanaji2005-brain-cell-metabolism
Created2026-05-17
Updated2026-06-13
metabolismsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother