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Source-faithful physiology lab for Kyrylov, Severyanova, Vieira, 2005. Public controls and outputs are mapped to real source symbols for oscillatory physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_corticotropin_releasing_hormone",
"label": "Initial Corticotropin Releasing Hormone",
"maps_to": "physiology_cellml_kyrylov_severyanova_vieira_2005_kyrylovseveryanovavieira2005_model.initial_corticotropin_releasing_hormone",
"description": "Initial value for Corticotropin Releasing Hormone. Maps to source symbol `y0`. Units: dimensionless. Naming evidence: source metadata names `y0` as `corticotropin-releasing hormone`.",
"accepted_units": [
"dimensionless"
]
},
{
"name": "initial_acth",
"label": "Initial Acth",
"maps_to": "physiology_cellml_kyrylov_severyanova_vieira_2005_kyrylovseveryanovavieira2005_model.initial_acth",
"description": "Initial value for Acth. Maps to source symbol `y1`. Units: dimensionless. Naming evidence: source metadata names `y1` as `ACTH`.",
"accepted_units": [
"dimensionless"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_kyrylov_severyanova_vieira_2005_kyrylovseveryanovavieira2005_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_kyrylov_severyanova_vieira_2005_kyrylovseveryanovavieira2005_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_kyrylov_severyanova_vieira_2005_kyrylovseveryanovavieira2005_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_kyrylov_severyanova_vieira_2005_kyrylovseveryanovavieira2005_model.variable_labels"
},
{
"name": "corticotropin_releasing_hormone",
"label": "Corticotropin Releasing Hormone",
"maps_to": "physiology_cellml_kyrylov_severyanova_vieira_2005_kyrylovseveryanovavieira2005_model.corticotropin_releasing_hormone",
"description": "Corticotropin Releasing Hormone. Maps to source symbol `y0`. Units: dimensionless. Naming evidence: source metadata names `y0` as `corticotropin-releasing hormone`."
},
{
"name": "acth",
"label": "Acth",
"maps_to": "physiology_cellml_kyrylov_severyanova_vieira_2005_kyrylovseveryanovavieira2005_model.acth",
"description": "Acth. Maps to source symbol `y1`. Units: dimensionless. Naming evidence: source metadata names `y1` as `ACTH`."
},
{
"name": "albumin_bound_cortisol",
"label": "Albumin Bound Cortisol",
"maps_to": "physiology_cellml_kyrylov_severyanova_vieira_2005_kyrylovseveryanovavieira2005_model.albumin_bound_cortisol",
"description": "Albumin Bound Cortisol. Maps to source symbol `y3`. Units: dimensionless. Naming evidence: source metadata names `y3` as `albumin-bound cortisol`."
},
{
"name": "cbg_bound_cortisol",
"label": "Cbg Bound Cortisol",
"maps_to": "physiology_cellml_kyrylov_severyanova_vieira_2005_kyrylovseveryanovavieira2005_model.cbg_bound_cortisol",
"description": "Cbg Bound Cortisol. Maps to source symbol `y4`. Units: dimensionless. Naming evidence: source metadata names `y4` as `CBG-bound cortisol`."
},
{
"name": "free_cortisol",
"label": "Free Cortisol",
"maps_to": "physiology_cellml_kyrylov_severyanova_vieira_2005_kyrylovseveryanovavieira2005_model.free_cortisol",
"description": "Free Cortisol. Maps to source symbol `y2`. Units: dimensionless. Naming evidence: source metadata names `y2` as `free cortisol`."
},
{
"name": "a00",
"label": "A00",
"maps_to": "physiology_cellml_kyrylov_severyanova_vieira_2005_kyrylovseveryanovavieira2005_model.a00",
"description": "A00. Maps to source symbol `a00`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Kyrylov2005 - Mathematical Oscillatory Behaviour Hypothalamic Pituitary Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_kyrylov_severyanova_vieira_2005_kyrylovseveryanovavieira2005_model",
"parameters": {
"model_path": "data/kyrylov_severyanova_vieira_2005.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_kyrylov_severyanova_vieira_2005_kyrylovseveryanovavieira2005_model_state"
],
"from": "physiology_cellml_kyrylov_severyanova_vieira_2005_kyrylovseveryanovavieira2005_model.state"
},
{
"to": [
"visualisation.physiology_cellml_kyrylov_severyanova_vieira_2005_kyrylovseveryanovavieira2005_model_summary"
],
"from": "physiology_cellml_kyrylov_severyanova_vieira_2005_kyrylovseveryanovavieira2005_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_kyrylov_severyanova_vieira_2005_kyrylovseveryanovavieira2005_model_trajectory"
],
"from": "physiology_cellml_kyrylov_severyanova_vieira_2005_kyrylovseveryanovavieira2005_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_kyrylov_severyanova_vieira_2005_kyrylovseveryanovavieira2005_model_variable_labels"
],
"from": "physiology_cellml_kyrylov_severyanova_vieira_2005_kyrylovseveryanovavieira2005_model.variable_labels"
}
],
"package": "kyrylov2005-mathematical-oscillatory-behaviour-hypothal-c2863849",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Kyrylov, Severyanova, Vieira, 2005. Public controls and outputs are mapped to real source symbols for oscillatory physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagekyrylov2005-mathematical-oscillatory-behaviour-hypothal-c2863849
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother