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A numerical simulation model to reproduce in vitro experiments of blood coagulation in microfluidic capillaries. A reduced one-equation model of thrombin distribution from the previous model under sim.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_atiii",
"label": "Initial Atiii",
"maps_to": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.initial_atiii",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ATIII`."
},
{
"name": "initial_model_state_ii",
"label": "Initial Model State Ii",
"maps_to": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.initial_model_state_ii",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `II`."
},
{
"name": "initial_vi_ia",
"label": "Initial Vi Ia",
"maps_to": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.initial_vi_ia",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `VIIa`."
},
{
"name": "initial_model_state_tf",
"label": "Initial Model State Tf",
"maps_to": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.initial_model_state_tf",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `TF`."
},
{
"name": "initial_model_state_xa",
"label": "Initial Model State Xa",
"maps_to": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.initial_model_state_xa",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Xa`."
},
{
"name": "initial_i_ia",
"label": "Initial I Ia",
"maps_to": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.initial_i_ia",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `IIa`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.species_labels"
},
{
"name": "atiii",
"maps_to": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.atiii"
},
{
"name": "model_state_ii",
"maps_to": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.model_state_ii"
},
{
"name": "vi_ia",
"maps_to": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.vi_ia"
},
{
"name": "model_state_tf",
"maps_to": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.model_state_tf"
},
{
"name": "model_state_xa",
"maps_to": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.model_state_xa"
},
{
"name": "i_ia",
"maps_to": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.i_ia"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Bouchnita2020 Model For Blood Coagulation Under Venous Flow Condition Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model_state"
],
"from": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model_summary"
],
"from": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model_species_labels"
],
"from": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.species_labels"
}
],
"package": "bouchnita2020-model-for-blood-coagulation-under-venous-d1bbe325",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "A numerical simulation model to reproduce in vitro experiments of blood coagulation in microfluidic capillaries. A reduced one-equation model of thrombin distribution from the previous model under sim.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagebouchnita2020-model-for-blood-coagulation-under-venous-d1bbe325
Created2026-05-17
Updated2026-06-13
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother