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Source-faithful physiology lab for Topp2000_BetaCellMass_Diabetes. Public controls and outputs are mapped to real source symbols for glucose-insulin physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_glucose",
"label": "Initial Glucose",
"maps_to": "physiology_sbml_topp2000_betacellmass_diabetes_biomd0000000341_model.initial_glucose",
"description": "Initial value for Glucose. Maps to source symbol `G`. Units: native SBML value. Naming evidence: source metadata names `G` as `glucose`."
},
{
"name": "initial_insulin",
"label": "Initial Insulin",
"maps_to": "physiology_sbml_topp2000_betacellmass_diabetes_biomd0000000341_model.initial_insulin",
"description": "Initial value for Insulin. Maps to source symbol `I`. Units: native SBML value. Naming evidence: source metadata names `I` as `insulin`."
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_sbml_topp2000_betacellmass_diabetes_biomd0000000341_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_sbml_topp2000_betacellmass_diabetes_biomd0000000341_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_sbml_topp2000_betacellmass_diabetes_biomd0000000341_model.trajectory"
},
{
"name": "species_labels",
"label": "Observable Labels",
"maps_to": "physiology_sbml_topp2000_betacellmass_diabetes_biomd0000000341_model.species_labels"
},
{
"name": "glucose",
"label": "Glucose",
"maps_to": "physiology_sbml_topp2000_betacellmass_diabetes_biomd0000000341_model.glucose",
"description": "Glucose. Maps to source symbol `G`. Units: native SBML value. Naming evidence: source metadata names `G` as `glucose`."
},
{
"name": "insulin",
"label": "Insulin",
"maps_to": "physiology_sbml_topp2000_betacellmass_diabetes_biomd0000000341_model.insulin",
"description": "Insulin. Maps to source symbol `I`. Units: native SBML value. Naming evidence: source metadata names `I` as `insulin`."
},
{
"name": "mass",
"label": "Mass",
"maps_to": "physiology_sbml_topp2000_betacellmass_diabetes_biomd0000000341_model.mass",
"description": "Mass. Maps to source symbol `B`. Units: native SBML value. Naming evidence: source metadata names `B` as `Mass`."
}
]
},
"title": "Topp2000 - Betacellmass Diabetes Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_sbml_topp2000_betacellmass_diabetes_biomd0000000341_model",
"parameters": {
"model_path": "data/BIOMD0000000341.xml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_sbml_topp2000_betacellmass_diabetes_biomd0000000341_model_state"
],
"from": "physiology_sbml_topp2000_betacellmass_diabetes_biomd0000000341_model.state"
},
{
"to": [
"visualisation.physiology_sbml_topp2000_betacellmass_diabetes_biomd0000000341_model_summary"
],
"from": "physiology_sbml_topp2000_betacellmass_diabetes_biomd0000000341_model.summary"
},
{
"to": [
"visualisation.physiology_sbml_topp2000_betacellmass_diabetes_biomd0000000341_model_trajectory"
],
"from": "physiology_sbml_topp2000_betacellmass_diabetes_biomd0000000341_model.trajectory"
},
{
"to": [
"visualisation.physiology_sbml_topp2000_betacellmass_diabetes_biomd0000000341_model_species_labels"
],
"from": "physiology_sbml_topp2000_betacellmass_diabetes_biomd0000000341_model.species_labels"
}
],
"package": "topp2000-betacellmass-diabetes",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Topp2000_BetaCellMass_Diabetes. Public controls and outputs are mapped to real source symbols for glucose-insulin physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagetopp2000-betacellmass-diabetes
Created2026-05-23
Updated2026-06-13
physiologysbmlbiomodels_ebifaithfulvisualisationother