About lab
One published Lab
Build with this Lab. Run it anywhere.
Use the same immutable release locally or through managed cloud execution, with its exact version and provenance preserved.
Preparing exact examples…
Clean Biosimulant lab for metabolic and hormone-linked signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_coenzyme_a",
"label": "Initial coenzyme A",
"maps_to": "signaling_sbml_oliveira2020_beta_alanine_pathway_for_3_hydroxyp_model2010030002_model.initial_coenzyme_a",
"description": "Initial level of coenzyme A. Maps to SBML symbol `COA`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_cysteine",
"label": "Initial cysteine",
"maps_to": "signaling_sbml_oliveira2020_beta_alanine_pathway_for_3_hydroxyp_model2010030002_model.initial_cysteine",
"description": "Initial level of cysteine. Maps to SBML symbol `CYS`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_h2o",
"label": "Initial H2O",
"maps_to": "signaling_sbml_oliveira2020_beta_alanine_pathway_for_3_hydroxyp_model2010030002_model.initial_h2o",
"description": "Initial level of H2O. Maps to SBML symbol `H2O`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "camp",
"label": "cAMP",
"maps_to": "signaling_sbml_oliveira2020_beta_alanine_pathway_for_3_hydroxyp_model2010030002_model.camp",
"description": "cAMP. Maps to SBML symbol `CAMP` and is emitted in native SBML units."
},
{
"name": "accoa",
"label": "ACCOA",
"maps_to": "signaling_sbml_oliveira2020_beta_alanine_pathway_for_3_hydroxyp_model2010030002_model.accoa",
"description": "ACCOA. Maps to SBML symbol `ACCOA` and is emitted in native SBML units."
},
{
"name": "source_defined_aco_state",
"label": "source-defined ACO state",
"maps_to": "signaling_sbml_oliveira2020_beta_alanine_pathway_for_3_hydroxyp_model2010030002_model.source_defined_aco_state",
"description": "source-defined ACO state. Maps to SBML symbol `ACO` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_oliveira2020_beta_alanine_pathway_for_3_hydroxyp_model2010030002_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_oliveira2020_beta_alanine_pathway_for_3_hydroxyp_model2010030002_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_oliveira2020_beta_alanine_pathway_for_3_hydroxyp_model2010030002_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"metabolic-signaling"
],
"title": "Oliveira2020 - Beta-Alanine pathway for 3-hydroxypropionate production from glucose Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_oliveira2020_beta_alanine_pathway_for_3_hydroxyp_model2010030002_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_oliveira2020_beta_alanine_pathway_for_3_hydroxyp_model2010030002_model_state"
],
"from": "signaling_sbml_oliveira2020_beta_alanine_pathway_for_3_hydroxyp_model2010030002_model.state"
},
{
"to": [
"visualisation.signaling_sbml_oliveira2020_beta_alanine_pathway_for_3_hydroxyp_model2010030002_model_summary"
],
"from": "signaling_sbml_oliveira2020_beta_alanine_pathway_for_3_hydroxyp_model2010030002_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_oliveira2020_beta_alanine_pathway_for_3_hydroxyp_model2010030002_model_species_labels"
],
"from": "signaling_sbml_oliveira2020_beta_alanine_pathway_for_3_hydroxyp_model2010030002_model.species_labels"
}
],
"package": "oliveira2020-beta-alanine-pathway-for-3-hydroxyp",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for metabolic and hormone-linked signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packageoliveira2020-beta-alanine-pathway-for-3-hydroxyp
Created2026-06-13
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebimetabolic-signalingvisualisationother