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constitutive synthetic expression modulator. Rantasalo2015-Synthetic_expresion_modulator_constitutiveSTF_B42This model is part of a family of models describing a modular synthetic expression system that modulates the expression level of a gene i. It can be used to explore generegulation rantasalo2016 synthetic expresion modulator cons dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [],
"outputs": [
{
"name": "mcherry_messenger_rna",
"maps_to": "rantasalo2016_constitutive_stf_b42.mcherry_messenger_rna"
},
{
"name": "mcherry_reporter",
"maps_to": "rantasalo2016_constitutive_stf_b42.mcherry_reporter"
},
{
"name": "cytosolic_transcription_factor",
"maps_to": "rantasalo2016_constitutive_stf_b42.cytosolic_transcription_factor"
},
{
"name": "nuclear_transcription_factor",
"maps_to": "rantasalo2016_constitutive_stf_b42.nuclear_transcription_factor"
},
{
"name": "state",
"maps_to": "rantasalo2016_constitutive_stf_b42.state"
},
{
"name": "summary",
"maps_to": "rantasalo2016_constitutive_stf_b42.summary"
},
{
"name": "species_labels",
"maps_to": "rantasalo2016_constitutive_stf_b42.species_labels"
}
]
},
"title": "Rantasalo2016 Constitutive Stf B42 Lab",
"models": [
{
"path": "models/core",
"alias": "rantasalo2016_constitutive_stf_b42",
"parameters": {
"model_path": "data/MODEL1510230002.xml",
"integration_step": 0.1
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.rantasalo2016_constitutive_stf_b42_mcherry_messenger_rna"
],
"from": "rantasalo2016_constitutive_stf_b42.mcherry_messenger_rna"
},
{
"to": [
"visualisation.rantasalo2016_constitutive_stf_b42_mcherry_reporter"
],
"from": "rantasalo2016_constitutive_stf_b42.mcherry_reporter"
},
{
"to": [
"visualisation.rantasalo2016_constitutive_stf_b42_cytosolic_transcription_factor"
],
"from": "rantasalo2016_constitutive_stf_b42.cytosolic_transcription_factor"
},
{
"to": [
"visualisation.rantasalo2016_constitutive_stf_b42_nuclear_transcription_factor"
],
"from": "rantasalo2016_constitutive_stf_b42.nuclear_transcription_factor"
},
{
"to": [
"visualisation.rantasalo2016_constitutive_stf_b42_state"
],
"from": "rantasalo2016_constitutive_stf_b42.state"
},
{
"to": [
"visualisation.rantasalo2016_constitutive_stf_b42_summary"
],
"from": "rantasalo2016_constitutive_stf_b42.summary"
},
{
"to": [
"visualisation.rantasalo2016_constitutive_stf_b42_species_labels"
],
"from": "rantasalo2016_constitutive_stf_b42.species_labels"
}
],
"package": "rantasalo2016-constitutive-stf-b42",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"version": "1.0.1",
"description": "constitutive synthetic expression modulator. Rantasalo2015-Synthetic_expresion_modulator_constitutiveSTF_B42This model is part of a family of models describing a modular synthetic expression system that modulates the expression level of a gene i. It can be used to explore generegulation rantasalo2016 synthetic expresion modulator cons dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packagerantasalo2016-constitutive-stf-b42
Created2026-05-15
Updated2026-06-13
generegulationsbmlbiomodels_ebifaithfulvisualisationother