Singh2006_TCA_Ecoli_acetate Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_acetyl_coa_or_acetate_pool",
        "label": "Initial Acetyl Coa Or Acetate Pool",
        "maps_to": "pharmacology_sbml_singh2006_tca_ecoli_acetate_biomd0000000221_model.initial_acetyl_coa_or_acetate_pool"
      },
      {
        "name": "initial_oxaloacetate_pool",
        "label": "Initial Oxaloacetate Pool",
        "maps_to": "pharmacology_sbml_singh2006_tca_ecoli_acetate_biomd0000000221_model.initial_oxaloacetate_pool"
      },
      {
        "name": "initial_coa_pool",
        "label": "Initial Coa Pool",
        "maps_to": "pharmacology_sbml_singh2006_tca_ecoli_acetate_biomd0000000221_model.initial_coa_pool"
      },
      {
        "name": "initial_citrate_pool",
        "label": "Initial Citrate Pool",
        "maps_to": "pharmacology_sbml_singh2006_tca_ecoli_acetate_biomd0000000221_model.initial_citrate_pool"
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Tracked source state",
        "maps_to": "pharmacology_sbml_singh2006_tca_ecoli_acetate_biomd0000000221_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "pharmacology_sbml_singh2006_tca_ecoli_acetate_biomd0000000221_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Observable labels",
        "maps_to": "pharmacology_sbml_singh2006_tca_ecoli_acetate_biomd0000000221_model.species_labels"
      },
      {
        "name": "acetate_or_acetyl_coa_pool",
        "label": "Acetate Or Acetyl Coa Pool",
        "maps_to": "pharmacology_sbml_singh2006_tca_ecoli_acetate_biomd0000000221_model.acetate_or_acetyl_coa_pool"
      },
      {
        "name": "oxaloacetate_pool",
        "label": "Oxaloacetate Pool",
        "maps_to": "pharmacology_sbml_singh2006_tca_ecoli_acetate_biomd0000000221_model.oxaloacetate_pool"
      },
      {
        "name": "coa_pool",
        "label": "Coa Pool",
        "maps_to": "pharmacology_sbml_singh2006_tca_ecoli_acetate_biomd0000000221_model.coa_pool"
      },
      {
        "name": "citrate_pool",
        "label": "Citrate Pool",
        "maps_to": "pharmacology_sbml_singh2006_tca_ecoli_acetate_biomd0000000221_model.citrate_pool"
      },
      {
        "name": "isocitrate_pool",
        "label": "Isocitrate Pool",
        "maps_to": "pharmacology_sbml_singh2006_tca_ecoli_acetate_biomd0000000221_model.isocitrate_pool"
      },
      {
        "name": "alpha_ketoglutarate_pool",
        "label": "Alpha Ketoglutarate Pool",
        "maps_to": "pharmacology_sbml_singh2006_tca_ecoli_acetate_biomd0000000221_model.alpha_ketoglutarate_pool"
      },
      {
        "name": "succinyl_coa_pool",
        "label": "Succinyl Coa Pool",
        "maps_to": "pharmacology_sbml_singh2006_tca_ecoli_acetate_biomd0000000221_model.succinyl_coa_pool"
      },
      {
        "name": "succinate_pool",
        "label": "Succinate Pool",
        "maps_to": "pharmacology_sbml_singh2006_tca_ecoli_acetate_biomd0000000221_model.succinate_pool"
      }
    ]
  },
  "tags": [
    "pharmacology",
    "metabolism",
    "microbiology",
    "systems-biology",
    "sbml",
    "tellurium",
    "faithful",
    "biomodels_ebi"
  ],
  "title": "Singh2006_TCA_Ecoli_acetate Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "pharmacology_sbml_singh2006_tca_ecoli_acetate_biomd0000000221_model",
      "parameters": {
        "model_path": "data/BIOMD0000000221.xml",
        "integration_step": 0.05
      }
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.pharmacology_sbml_singh2006_tca_ecoli_acetate_biomd0000000221_model_state"
      ],
      "from": "pharmacology_sbml_singh2006_tca_ecoli_acetate_biomd0000000221_model.state"
    },
    {
      "to": [
        "visualisation.pharmacology_sbml_singh2006_tca_ecoli_acetate_biomd0000000221_model_summary"
      ],
      "from": "pharmacology_sbml_singh2006_tca_ecoli_acetate_biomd0000000221_model.summary"
    },
    {
      "to": [
        "visualisation.pharmacology_sbml_singh2006_tca_ecoli_acetate_biomd0000000221_model_species_labels"
      ],
      "from": "pharmacology_sbml_singh2006_tca_ecoli_acetate_biomd0000000221_model.species_labels"
    }
  ],
  "package": "singh2006-ecoli-tca-acetate",
  "runtime": {
    "duration": 5,
    "initial_inputs": {},
    "communication_step": 0.5
  },
  "version": "1.0.0",
  "description": "This a model from the article: Kinetic modeling of tricarboxylic acid cycle and glyoxylate bypass in Mycobacterium tuberculosis, and its application to assessment of drug targets. It can be used to explore dose-response dynamics and compare treatment scenarios across conditions.",
  "schema_version": "2.0"
}