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Source-faithful physiology lab for Shorten, Ocallaghan, Davidson, Soboleva, 2007. Public controls and outputs are mapped to real source symbols for calcium handling.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_intracellular_sodium",
"label": "Initial Intracellular Sodium",
"maps_to": "physiology_cellml_shorten_ocallaghan_davidson_soboleva_2007_shortenocallaghandavidsonsoboleva2007_model.initial_intracellular_sodium",
"description": "Initial value for Intracellular Sodium. Maps to source symbol `Na_i`. Units: milliM. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"milliM"
]
},
{
"name": "initial_intracellular_potassium",
"label": "Initial Intracellular Potassium",
"maps_to": "physiology_cellml_shorten_ocallaghan_davidson_soboleva_2007_shortenocallaghandavidsonsoboleva2007_model.initial_intracellular_potassium",
"description": "Initial value for Intracellular Potassium. Maps to source symbol `K_i`. Units: milliM. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"milliM"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_shorten_ocallaghan_davidson_soboleva_2007_shortenocallaghandavidsonsoboleva2007_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_shorten_ocallaghan_davidson_soboleva_2007_shortenocallaghandavidsonsoboleva2007_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_shorten_ocallaghan_davidson_soboleva_2007_shortenocallaghandavidsonsoboleva2007_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_shorten_ocallaghan_davidson_soboleva_2007_shortenocallaghandavidsonsoboleva2007_model.variable_labels"
},
{
"name": "membrane_voltage",
"label": "Membrane Voltage",
"maps_to": "physiology_cellml_shorten_ocallaghan_davidson_soboleva_2007_shortenocallaghandavidsonsoboleva2007_model.membrane_voltage",
"description": "Membrane Voltage. Maps to source symbol `V_m`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "sodium_current",
"label": "Sodium Current",
"maps_to": "physiology_cellml_shorten_ocallaghan_davidson_soboleva_2007_shortenocallaghandavidsonsoboleva2007_model.sodium_current",
"description": "Sodium Current. Maps to source symbol `I_NaK`. Units: microA_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "sodium_current_i_na",
"label": "Sodium Current I Na",
"maps_to": "physiology_cellml_shorten_ocallaghan_davidson_soboleva_2007_shortenocallaghandavidsonsoboleva2007_model.sodium_current_i_na",
"description": "Sodium Current I Na. Maps to source symbol `I_Na`. Units: microA_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "sodium_current_i_na_k_bar",
"label": "Sodium Current I Na K Bar",
"maps_to": "physiology_cellml_shorten_ocallaghan_davidson_soboleva_2007_shortenocallaghandavidsonsoboleva2007_model.sodium_current_i_na_k_bar",
"description": "Sodium Current I Na K Bar. Maps to source symbol `I_NaK_bar`. Units: microA_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "sodium_current_i_na_k_bar_t",
"label": "Sodium Current I Na K Bar T",
"maps_to": "physiology_cellml_shorten_ocallaghan_davidson_soboleva_2007_shortenocallaghandavidsonsoboleva2007_model.sodium_current_i_na_k_bar_t",
"description": "Sodium Current I Na K Bar T. Maps to source symbol `I_NaK_bar_t`. Units: microA_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "sodium_current_i_na_k_t",
"label": "Sodium Current I Na K T",
"maps_to": "physiology_cellml_shorten_ocallaghan_davidson_soboleva_2007_shortenocallaghandavidsonsoboleva2007_model.sodium_current_i_na_k_t",
"description": "Sodium Current I Na K T. Maps to source symbol `I_NaK_t`. Units: microA_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Shorten2007 - Mathematical Fatigue Skeletal Muscle Force Contraction Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_shorten_ocallaghan_davidson_soboleva_2007_shortenocallaghandavidsonsoboleva2007_model",
"parameters": {
"model_path": "data/shorten_ocallaghan_davidson_soboleva_2007.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_shorten_ocallaghan_davidson_soboleva_2007_shortenocallaghandavidsonsoboleva2007_model_state"
],
"from": "physiology_cellml_shorten_ocallaghan_davidson_soboleva_2007_shortenocallaghandavidsonsoboleva2007_model.state"
},
{
"to": [
"visualisation.physiology_cellml_shorten_ocallaghan_davidson_soboleva_2007_shortenocallaghandavidsonsoboleva2007_model_summary"
],
"from": "physiology_cellml_shorten_ocallaghan_davidson_soboleva_2007_shortenocallaghandavidsonsoboleva2007_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_shorten_ocallaghan_davidson_soboleva_2007_shortenocallaghandavidsonsoboleva2007_model_trajectory"
],
"from": "physiology_cellml_shorten_ocallaghan_davidson_soboleva_2007_shortenocallaghandavidsonsoboleva2007_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_shorten_ocallaghan_davidson_soboleva_2007_shortenocallaghandavidsonsoboleva2007_model_variable_labels"
],
"from": "physiology_cellml_shorten_ocallaghan_davidson_soboleva_2007_shortenocallaghandavidsonsoboleva2007_model.variable_labels"
}
],
"package": "shorten2007-mathematical-fatigue-skeletal-muscle-force-84f5daa8",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Shorten, Ocallaghan, Davidson, Soboleva, 2007. Public controls and outputs are mapped to real source symbols for calcium handling.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packageshorten2007-mathematical-fatigue-skeletal-muscle-force-84f5daa8
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother