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Use the same immutable release locally or through managed cloud execution, with its exact version and provenance preserved.
Preparing exact examples…
Figure4 and Figure5 can be simulated by Copasi. Figure4 can be simulated in MathSBML as well.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_internalization",
"label": "Initial Internalization",
"maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.initial_internalization",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `internalization`."
},
{
"name": "initial_model_state_shc",
"label": "Initial Model State Shc",
"maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.initial_model_state_shc",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Shc`."
},
{
"name": "initial_model_state_erk",
"label": "Initial Model State ERK",
"maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.initial_model_state_erk",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ERK`."
},
{
"name": "initial_model_state_p_i",
"label": "Initial Model State P I",
"maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.initial_model_state_p_i",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `P_I`."
},
{
"name": "initial_model_state_hrg",
"label": "Initial Model State Hrg",
"maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.initial_model_state_hrg",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `HRG`."
},
{
"name": "initial_ras_gdp",
"label": "Initial RAS Gdp",
"maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.initial_ras_gdp",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `RasGDP`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.species_labels"
},
{
"name": "internalization",
"maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.internalization"
},
{
"name": "shc",
"maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.shc"
},
{
"name": "erk",
"maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.erk"
},
{
"name": "p_i",
"maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.p_i"
},
{
"name": "hrg",
"maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.hrg"
},
{
"name": "ras_gdp",
"maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.ras_gdp"
}
]
},
"tags": [
"signaling",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Hatakeyama2003 Mapk Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model_state"
],
"from": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model_summary"
],
"from": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model_species_labels"
],
"from": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.species_labels"
}
],
"package": "hatakeyama2003-mapk",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Figure4 and Figure5 can be simulated by Copasi. Figure4 can be simulated in MathSBML as well.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagehatakeyama2003-mapk
Created2026-05-17
Updated2026-06-13
signalingsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother