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Clean Biosimulant lab for NF-kB pathway signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_a_c_2pnq_level",
"label": "A C 2pnq",
"maps_to": "signaling_sbml_basak_cell_2007_model8478881246_model.initial_a_c_2pnq_level",
"description": "A C 2pnq source parameter. Maps to SBML symbol `mw67DBC35D_6ABA_4E03_A921_AA3E88FCDA17` and preserves the bundled default."
}
],
"outputs": [
{
"name": "ik_ba_nfk_b",
"label": "Ik Ba Nfk B",
"maps_to": "signaling_sbml_basak_cell_2007_model8478881246_model.ik_ba_nfk_b",
"description": "Ik Ba Nfk B. Maps to SBML symbol `mwB5B12B45_0F61_44BD_9781_989D8B015906` and is emitted in native SBML units."
},
{
"name": "ik_ba_nfk_bn",
"label": "Ik Ba Nfk Bn",
"maps_to": "signaling_sbml_basak_cell_2007_model8478881246_model.ik_ba_nfk_bn",
"description": "Ik Ba Nfk Bn. Maps to SBML symbol `mwA7D14F2B_20BE_4FF7_83B7_8B24C34D94A6` and is emitted in native SBML units."
},
{
"name": "ik_ba_ikknfk_b",
"label": "Ik Ba Ikknfk B",
"maps_to": "signaling_sbml_basak_cell_2007_model8478881246_model.ik_ba_ikknfk_b",
"description": "Ik Ba Ikknfk B. Maps to SBML symbol `mw67E597F5_E642_45A3_A377_0BD9CE41467B` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_basak_cell_2007_model8478881246_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_basak_cell_2007_model8478881246_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_basak_cell_2007_model8478881246_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"nfkb"
],
"title": "Basak_Cell_2007 Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_basak_cell_2007_model8478881246_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_basak_cell_2007_model8478881246_model_state"
],
"from": "signaling_sbml_basak_cell_2007_model8478881246_model.state"
},
{
"to": [
"visualisation.signaling_sbml_basak_cell_2007_model8478881246_model_summary"
],
"from": "signaling_sbml_basak_cell_2007_model8478881246_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_basak_cell_2007_model8478881246_model_species_labels"
],
"from": "signaling_sbml_basak_cell_2007_model8478881246_model.species_labels"
}
],
"package": "basak-cell-2007",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for NF-kB pathway signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagebasak-cell-2007
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebinfkbvisualisationother