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Source-faithful physiology lab for Topp, Promislow, Devries, Miura, Finegood, 2000. Public controls and outputs are mapped to real source symbols for glucose-insulin physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_glucose_dynamics_g",
"label": "Initial Glucose Dynamics G",
"maps_to": "physiology_cellml_topp_promislow_devries_miura_finegood_2000_topppromislowdevriesmiurafinegood2000_model.initial_glucose_dynamics_g",
"description": "Initial value for Glucose Dynamics G. Maps to source symbol `G`. Units: mg_per_dl. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"mg_per_dl"
]
},
{
"name": "initial_insulin_dynamics_i",
"label": "Initial Insulin Dynamics I",
"maps_to": "physiology_cellml_topp_promislow_devries_miura_finegood_2000_topppromislowdevriesmiurafinegood2000_model.initial_insulin_dynamics_i",
"description": "Initial value for Insulin Dynamics I. Maps to source symbol `I`. Units: microU_per_ml. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"microU_per_ml"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_topp_promislow_devries_miura_finegood_2000_topppromislowdevriesmiurafinegood2000_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_topp_promislow_devries_miura_finegood_2000_topppromislowdevriesmiurafinegood2000_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_topp_promislow_devries_miura_finegood_2000_topppromislowdevriesmiurafinegood2000_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_topp_promislow_devries_miura_finegood_2000_topppromislowdevriesmiurafinegood2000_model.variable_labels"
},
{
"name": "glucose_dynamics_g",
"label": "Glucose Dynamics G",
"maps_to": "physiology_cellml_topp_promislow_devries_miura_finegood_2000_topppromislowdevriesmiurafinegood2000_model.glucose_dynamics_g",
"description": "Glucose Dynamics G. Maps to source symbol `G`. Units: mg_per_dl. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "insulin_dynamics_i",
"label": "Insulin Dynamics I",
"maps_to": "physiology_cellml_topp_promislow_devries_miura_finegood_2000_topppromislowdevriesmiurafinegood2000_model.insulin_dynamics_i",
"description": "Insulin Dynamics I. Maps to source symbol `I`. Units: microU_per_ml. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "glucose_dynamics_r0",
"label": "Glucose Dynamics R0",
"maps_to": "physiology_cellml_topp_promislow_devries_miura_finegood_2000_topppromislowdevriesmiurafinegood2000_model.glucose_dynamics_r0",
"description": "Glucose Dynamics R0. Maps to source symbol `R0`. Units: mg_per_dl_per_day. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "glucose_dynamics_si",
"label": "Glucose Dynamics Si",
"maps_to": "physiology_cellml_topp_promislow_devries_miura_finegood_2000_topppromislowdevriesmiurafinegood2000_model.glucose_dynamics_si",
"description": "Glucose Dynamics Si. Maps to source symbol `SI`. Units: ml_per_microU_per_day. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "insulin_dynamics_k",
"label": "Insulin Dynamics K",
"maps_to": "physiology_cellml_topp_promislow_devries_miura_finegood_2000_topppromislowdevriesmiurafinegood2000_model.insulin_dynamics_k",
"description": "Insulin Dynamics K. Maps to source symbol `k`. Units: per_day. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "beta",
"label": "Beta",
"maps_to": "physiology_cellml_topp_promislow_devries_miura_finegood_2000_topppromislowdevriesmiurafinegood2000_model.beta",
"description": "Beta. Maps to source symbol `beta`. Units: mg. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Topp2000 - Glucose Insulin Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_topp_promislow_devries_miura_finegood_2000_topppromislowdevriesmiurafinegood2000_model",
"parameters": {
"model_path": "data/topp_promislow_devries_miura_finegood_2000.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_topp_promislow_devries_miura_finegood_2000_topppromislowdevriesmiurafinegood2000_model_state"
],
"from": "physiology_cellml_topp_promislow_devries_miura_finegood_2000_topppromislowdevriesmiurafinegood2000_model.state"
},
{
"to": [
"visualisation.physiology_cellml_topp_promislow_devries_miura_finegood_2000_topppromislowdevriesmiurafinegood2000_model_summary"
],
"from": "physiology_cellml_topp_promislow_devries_miura_finegood_2000_topppromislowdevriesmiurafinegood2000_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_topp_promislow_devries_miura_finegood_2000_topppromislowdevriesmiurafinegood2000_model_trajectory"
],
"from": "physiology_cellml_topp_promislow_devries_miura_finegood_2000_topppromislowdevriesmiurafinegood2000_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_topp_promislow_devries_miura_finegood_2000_topppromislowdevriesmiurafinegood2000_model_variable_labels"
],
"from": "physiology_cellml_topp_promislow_devries_miura_finegood_2000_topppromislowdevriesmiurafinegood2000_model.variable_labels"
}
],
"package": "topp2000-glucose-insulin",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Topp, Promislow, Devries, Miura, Finegood, 2000. Public controls and outputs are mapped to real source symbols for glucose-insulin physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagetopp2000-glucose-insulin
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother