Muraro2011 Auxin Cytokinin Root Fate Lab

{
  "io": {
    "inputs": [
      {
        "name": "starting_auxin_level",
        "label": "Starting auxin level",
        "units": "native SBML value",
        "default": 1,
        "maps_to": "muraro2011_root_fate.starting_auxin_level",
        "description": "Setup-time initial auxin level for the root-fate network. Maps to SBML symbol `Aux`."
      },
      {
        "name": "starting_cytokinin_level",
        "label": "Starting cytokinin level",
        "units": "native SBML value",
        "default": 1,
        "maps_to": "muraro2011_root_fate.starting_cytokinin_level",
        "description": "Setup-time initial cytokinin level for the root-fate network. Maps to SBML symbol `Ck`."
      }
    ],
    "outputs": [
      {
        "name": "auxin",
        "label": "Auxin",
        "maps_to": "muraro2011_root_fate.auxin",
        "description": "Auxin. Maps to SBML symbol `Aux`."
      },
      {
        "name": "cytokinin",
        "label": "Cytokinin",
        "maps_to": "muraro2011_root_fate.cytokinin",
        "description": "Cytokinin. Maps to SBML symbol `Ck`."
      },
      {
        "name": "indole_3_acetic_acid_messenger_rna",
        "label": "IAA mRNA",
        "maps_to": "muraro2011_root_fate.indole_3_acetic_acid_messenger_rna",
        "description": "IAA mRNA. Maps to SBML symbol `IAAm`."
      },
      {
        "name": "indole_3_acetic_acid_protein",
        "label": "IAA protein",
        "maps_to": "muraro2011_root_fate.indole_3_acetic_acid_protein",
        "description": "IAA protein. Maps to SBML symbol `IAAp`."
      },
      {
        "name": "auxin_transport_inhibitor_response_1_complex",
        "label": "Auxin-TIR1 complex",
        "maps_to": "muraro2011_root_fate.auxin_transport_inhibitor_response_1_complex",
        "description": "Auxin-TIR1 complex. Maps to SBML symbol `AuxTIR1`."
      },
      {
        "name": "auxin_indole_3_acetic_acid_complex",
        "label": "Auxin-IAA complex",
        "maps_to": "muraro2011_root_fate.auxin_indole_3_acetic_acid_complex",
        "description": "Auxin-IAA complex. Maps to SBML symbol `AuxTIAA`."
      },
      {
        "name": "auxin_response_factor_activity",
        "label": "ARF activity",
        "maps_to": "muraro2011_root_fate.auxin_response_factor_activity",
        "description": "ARF activity. Maps to SBML symbol `ARF`."
      },
      {
        "name": "pinformed_messenger_rna",
        "label": "PIN mRNA",
        "maps_to": "muraro2011_root_fate.pinformed_messenger_rna",
        "description": "PIN mRNA. Maps to SBML symbol `PINm`."
      },
      {
        "name": "pinformed_protein",
        "label": "PIN protein",
        "maps_to": "muraro2011_root_fate.pinformed_protein",
        "description": "PIN protein. Maps to SBML symbol `PINp`."
      },
      {
        "name": "response_regulator_a",
        "label": "Response regulator A",
        "maps_to": "muraro2011_root_fate.response_regulator_a",
        "description": "Response regulator A. Maps to SBML symbol `ARRAp`."
      },
      {
        "name": "response_regulator_b",
        "label": "Response regulator B",
        "maps_to": "muraro2011_root_fate.response_regulator_b",
        "description": "Response regulator B. Maps to SBML symbol `ARRBp`."
      },
      {
        "name": "state",
        "maps_to": "muraro2011_root_fate.state",
        "description": "Full friendly observable record."
      },
      {
        "name": "summary",
        "maps_to": "muraro2011_root_fate.summary",
        "description": "Core model run summary."
      },
      {
        "name": "species_labels",
        "maps_to": "muraro2011_root_fate.species_labels",
        "description": "Friendly observable display labels."
      }
    ]
  },
  "title": "Muraro2011 Auxin Cytokinin Root Fate Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "muraro2011_root_fate",
      "parameters": {
        "model_path": "data/BIOMD0000000416.xml",
        "integration_step": 0.1
      }
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.core_state"
      ],
      "from": "muraro2011_root_fate.state"
    },
    {
      "to": [
        "visualisation.core_summary"
      ],
      "from": "muraro2011_root_fate.summary"
    },
    {
      "to": [
        "visualisation.core_species_labels"
      ],
      "from": "muraro2011_root_fate.species_labels"
    }
  ],
  "package": "muraro2011-auxin-cytokinin-root-fate",
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "version": "1.0.0",
  "description": "Auxin-cytokinin cross-regulation model for Arabidopsis root cell-fate determination executed directly from SBML.",
  "schema_version": "2.0"
}