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Source-faithful physiology lab for Izakov, Katsnelson, Blyakhman, Markhasin, Shkylar, 1991. Public controls and outputs are mapped to real source symbols for calcium handling.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_model_state_a_1",
"label": "Initial Model State A 1 (source A_1)",
"maps_to": "physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model.initial_model_state_a_1",
"description": "Initial value for Model State A 1 (source A_1). Maps to source symbol `A_1`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label.",
"accepted_units": [
"dimensionless"
]
},
{
"name": "initial_model_state_n_2",
"label": "Initial Model State N 2 (source n_2)",
"maps_to": "physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model.initial_model_state_n_2",
"description": "Initial value for Model State N 2 (source n_2). Maps to source symbol `n_2`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label.",
"accepted_units": [
"dimensionless"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model.variable_labels"
},
{
"name": "alpha_1",
"label": "Alpha 1",
"maps_to": "physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model.alpha_1",
"description": "Alpha 1. Maps to source symbol `alpha_1`. Units: per_um. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "alpha_2",
"label": "Alpha 2",
"maps_to": "physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model.alpha_2",
"description": "Alpha 2. Maps to source symbol `alpha_2`. Units: per_um. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "phi_a_1",
"label": "Phi A 1",
"maps_to": "physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model.phi_a_1",
"description": "Phi A 1. Maps to source symbol `phi_A_1`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "model_state_a_1",
"label": "Model State A 1 (source A_1)",
"maps_to": "physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model.model_state_a_1",
"description": "Model State A 1 (source A_1). Maps to source symbol `A_1`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
},
{
"name": "model_state_n_2",
"label": "Model State N 2 (source n_2)",
"maps_to": "physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model.model_state_n_2",
"description": "Model State N 2 (source n_2). Maps to source symbol `n_2`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
},
{
"name": "beta_1",
"label": "Beta 1",
"maps_to": "physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model.beta_1",
"description": "Beta 1. Maps to source symbol `beta_1`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Izakov1991 - Izakov Katsnelson Blyakhman Markhasin Shkylar 19 Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model",
"parameters": {
"model_path": "data/izakov_katsnelson_blyakhman_markhasin_shkylar_1991.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model_state"
],
"from": "physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model.state"
},
{
"to": [
"visualisation.physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model_summary"
],
"from": "physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model_trajectory"
],
"from": "physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model_variable_labels"
],
"from": "physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model.variable_labels"
}
],
"package": "izakov1991-izakov-katsnelson-blyakhman-markhasin-shkylar-19",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Izakov, Katsnelson, Blyakhman, Markhasin, Shkylar, 1991. Public controls and outputs are mapped to real source symbols for calcium handling.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packageizakov1991-izakov-katsnelson-blyakhman-markhasin-shkylar-19
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother