Gardner1998 - Theory Controlling Cell Cycle Dynamics Using Reversibly Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_cyclin_concentration",
        "label": "Initial Cyclin Concentration",
        "maps_to": "physiology_cellml_gardner_dolnik_collins_1998_gardnerdolnikcollins1998_model.initial_cyclin_concentration",
        "description": "Initial value for Cyclin Concentration. Maps to source symbol `C`. Units: dimensionless. Naming evidence: source metadata names `C` as `cyclin concentration`.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_concentration_of_inhibitor_target_complex",
        "label": "Initial Concentration Of Inhibitor Target Complex",
        "maps_to": "physiology_cellml_gardner_dolnik_collins_1998_gardnerdolnikcollins1998_model.initial_concentration_of_inhibitor_target_complex",
        "description": "Initial value for Concentration Of Inhibitor Target Complex. Maps to source symbol `Z`. Units: dimensionless. Naming evidence: source metadata names `Z` as `concentration of inhibitor-target complex`.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_gardner_dolnik_collins_1998_gardnerdolnikcollins1998_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_gardner_dolnik_collins_1998_gardnerdolnikcollins1998_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_gardner_dolnik_collins_1998_gardnerdolnikcollins1998_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_gardner_dolnik_collins_1998_gardnerdolnikcollins1998_model.variable_labels"
      },
      {
        "name": "alpha",
        "label": "Alpha",
        "maps_to": "physiology_cellml_gardner_dolnik_collins_1998_gardnerdolnikcollins1998_model.alpha",
        "description": "Alpha. Maps to source symbol `alpha`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "cyclin_concentration",
        "label": "Cyclin Concentration",
        "maps_to": "physiology_cellml_gardner_dolnik_collins_1998_gardnerdolnikcollins1998_model.cyclin_concentration",
        "description": "Cyclin Concentration. Maps to source symbol `C`. Units: dimensionless. Naming evidence: source metadata names `C` as `cyclin concentration`."
      },
      {
        "name": "concentration_of_inhibitor_target_complex",
        "label": "Concentration Of Inhibitor Target Complex",
        "maps_to": "physiology_cellml_gardner_dolnik_collins_1998_gardnerdolnikcollins1998_model.concentration_of_inhibitor_target_complex",
        "description": "Concentration Of Inhibitor Target Complex. Maps to source symbol `Z`. Units: dimensionless. Naming evidence: source metadata names `Z` as `concentration of inhibitor-target complex`."
      },
      {
        "name": "concentration_of_unbound_inhibitor",
        "label": "Concentration Of Unbound Inhibitor",
        "maps_to": "physiology_cellml_gardner_dolnik_collins_1998_gardnerdolnikcollins1998_model.concentration_of_unbound_inhibitor",
        "description": "Concentration Of Unbound Inhibitor. Maps to source symbol `Y`. Units: dimensionless. Naming evidence: source metadata names `Y` as `concentration of unbound inhibitor`."
      },
      {
        "name": "fraction_of_active_cdc2_kinase",
        "label": "Fraction Of Active Cdc2 Kinase",
        "maps_to": "physiology_cellml_gardner_dolnik_collins_1998_gardnerdolnikcollins1998_model.fraction_of_active_cdc2_kinase",
        "description": "Fraction Of Active Cdc2 Kinase. Maps to source symbol `M`. Units: dimensionless. Naming evidence: source metadata names `M` as `fraction of active cdc2 kinase`."
      },
      {
        "name": "fraction_of_active_protease_which_degrades_cyclin",
        "label": "Fraction Of Active Protease Which Degrades Cyclin",
        "maps_to": "physiology_cellml_gardner_dolnik_collins_1998_gardnerdolnikcollins1998_model.fraction_of_active_protease_which_degrades_cyclin",
        "description": "Fraction Of Active Protease Which Degrades Cyclin. Maps to source symbol `X`. Units: dimensionless. Naming evidence: source metadata names `X` as `fraction of active protease which degrades cyclin`."
      }
    ]
  },
  "title": "Gardner1998 - Theory Controlling Cell Cycle Dynamics Using Reversibly Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "physiology_cellml_gardner_dolnik_collins_1998_gardnerdolnikcollins1998_model",
      "parameters": {
        "model_path": "data/gardner_dolnik_collins_1998.cellml",
        "integration_step": 0.01
      }
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
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      "from": "physiology_cellml_gardner_dolnik_collins_1998_gardnerdolnikcollins1998_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_gardner_dolnik_collins_1998_gardnerdolnikcollins1998_model_summary"
      ],
      "from": "physiology_cellml_gardner_dolnik_collins_1998_gardnerdolnikcollins1998_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_gardner_dolnik_collins_1998_gardnerdolnikcollins1998_model_trajectory"
      ],
      "from": "physiology_cellml_gardner_dolnik_collins_1998_gardnerdolnikcollins1998_model.trajectory"
    },
    {
      "to": [
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      ],
      "from": "physiology_cellml_gardner_dolnik_collins_1998_gardnerdolnikcollins1998_model.variable_labels"
    }
  ],
  "package": "gardner1998-theory-controlling-cell-cycle-dynamics-usin-1799616e",
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "version": "1.0.0",
  "description": "Source-faithful physiology lab for Gardner, Dolnik, Collins, 1998. Public controls and outputs are mapped to real source symbols for cell-cycle dynamics.",
  "schema_version": "2.0"
}