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One published Lab
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Use the same immutable release locally or through managed cloud execution, with its exact version and provenance preserved.
Preparing exact examples…
Protein names are HUGO names or usual names. In the latter case, they are identified with a star (*) and the HUGO name is given in notes.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_cyclin_h",
"label": "Initial Cyclin H",
"maps_to": "systemsbiology_sbml_calzone2008_rb_model4132046015_model.initial_cyclin_h",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `s401`."
},
{
"name": "initial_cyclin_e1_cdk2_p130",
"label": "Initial Cyclin E1 Cdk2 P130",
"maps_to": "systemsbiology_sbml_calzone2008_rb_model4132046015_model.initial_cyclin_e1_cdk2_p130",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `s1486`."
},
{
"name": "initial_cyclin_e1_cdk2_p107",
"label": "Initial Cyclin E1 Cdk2 P107",
"maps_to": "systemsbiology_sbml_calzone2008_rb_model4132046015_model.initial_cyclin_e1_cdk2_p107",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `s1487`."
},
{
"name": "initial_cyclin_e1_cdk2_cdkn1_a",
"label": "Initial Cyclin E1 Cdk2 Cdkn1 A",
"maps_to": "systemsbiology_sbml_calzone2008_rb_model4132046015_model.initial_cyclin_e1_cdk2_cdkn1_a",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `s787`."
},
{
"name": "initial_cyclin_e1_cdk2",
"label": "Initial Cyclin E1 Cdk2",
"maps_to": "systemsbiology_sbml_calzone2008_rb_model4132046015_model.initial_cyclin_e1_cdk2",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `s723`."
},
{
"name": "initial_cyclin_e1_cdk2_2",
"label": "Initial Cyclin E1 Cdk2 2",
"maps_to": "systemsbiology_sbml_calzone2008_rb_model4132046015_model.initial_cyclin_e1_cdk2_2",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `s721`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_calzone2008_rb_model4132046015_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_calzone2008_rb_model4132046015_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_calzone2008_rb_model4132046015_model.species_labels"
},
{
"name": "cyclin_h",
"maps_to": "systemsbiology_sbml_calzone2008_rb_model4132046015_model.cyclin_h"
},
{
"name": "cyclin_e1_cdk2_p130",
"maps_to": "systemsbiology_sbml_calzone2008_rb_model4132046015_model.cyclin_e1_cdk2_p130"
},
{
"name": "cyclin_e1_cdk2_p107",
"maps_to": "systemsbiology_sbml_calzone2008_rb_model4132046015_model.cyclin_e1_cdk2_p107"
},
{
"name": "cyclin_e1_cdk2_cdkn1_a",
"maps_to": "systemsbiology_sbml_calzone2008_rb_model4132046015_model.cyclin_e1_cdk2_cdkn1_a"
},
{
"name": "cyclin_e1_cdk2",
"maps_to": "systemsbiology_sbml_calzone2008_rb_model4132046015_model.cyclin_e1_cdk2"
},
{
"name": "cyclin_e1_cdk2_2",
"maps_to": "systemsbiology_sbml_calzone2008_rb_model4132046015_model.cyclin_e1_cdk2_2"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Calzone2008 Rb Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_calzone2008_rb_model4132046015_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_calzone2008_rb_model4132046015_model_state"
],
"from": "systemsbiology_sbml_calzone2008_rb_model4132046015_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_calzone2008_rb_model4132046015_model_summary"
],
"from": "systemsbiology_sbml_calzone2008_rb_model4132046015_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_calzone2008_rb_model4132046015_model_species_labels"
],
"from": "systemsbiology_sbml_calzone2008_rb_model4132046015_model.species_labels"
}
],
"package": "calzone2008-rb",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Protein names are HUGO names or usual names. In the latter case, they are identified with a star (*) and the HUGO name is given in notes.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagecalzone2008-rb
Created2026-05-17
Updated2026-06-13
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother