About lab
One published Lab
Build with this Lab. Run it anywhere.
Use the same immutable release locally or through managed cloud execution, with its exact version and provenance preserved.
Preparing exact examples…
Source-faithful physiology lab for Saucerman, Bers, 2008. Public controls and outputs are mapped to real source symbols for calcium handling.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_ca2_ca_m",
"label": "Initial Ca2 Ca M",
"maps_to": "physiology_cellml_saucerman_bers_2008_saucermanbers2008_model.initial_ca2_ca_m",
"description": "Initial value for Ca2 Ca M. Maps to source symbol `Ca2CaM`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"micromolar"
]
},
{
"name": "initial_ca2_ca_mb",
"label": "Initial Ca2 Ca Mb",
"maps_to": "physiology_cellml_saucerman_bers_2008_saucermanbers2008_model.initial_ca2_ca_mb",
"description": "Initial value for Ca2 Ca Mb. Maps to source symbol `Ca2CaMB`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"micromolar"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_saucerman_bers_2008_saucermanbers2008_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_saucerman_bers_2008_saucermanbers2008_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_saucerman_bers_2008_saucermanbers2008_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_saucerman_bers_2008_saucermanbers2008_model.variable_labels"
},
{
"name": "ca2_ca_m",
"label": "Ca2 Ca M",
"maps_to": "physiology_cellml_saucerman_bers_2008_saucermanbers2008_model.ca2_ca_m",
"description": "Ca2 Ca M. Maps to source symbol `Ca2CaM`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "ca2_ca_mb",
"label": "Ca2 Ca Mb",
"maps_to": "physiology_cellml_saucerman_bers_2008_saucermanbers2008_model.ca2_ca_mb",
"description": "Ca2 Ca Mb. Maps to source symbol `Ca2CaMB`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "ca2_ca_mca_n",
"label": "Ca2 Ca Mca N",
"maps_to": "physiology_cellml_saucerman_bers_2008_saucermanbers2008_model.ca2_ca_mca_n",
"description": "Ca2 Ca Mca N. Maps to source symbol `Ca2CaMCaN`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "ca4_ca_m",
"label": "Ca4 Ca M",
"maps_to": "physiology_cellml_saucerman_bers_2008_saucermanbers2008_model.ca4_ca_m",
"description": "Ca4 Ca M. Maps to source symbol `Ca4CaM`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "ca4_ca_mb",
"label": "Ca4 Ca Mb",
"maps_to": "physiology_cellml_saucerman_bers_2008_saucermanbers2008_model.ca4_ca_mb",
"description": "Ca4 Ca Mb. Maps to source symbol `Ca4CaMB`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "ca4_ca_mca_n",
"label": "Ca4 Ca Mca N",
"maps_to": "physiology_cellml_saucerman_bers_2008_saucermanbers2008_model.ca4_ca_mca_n",
"description": "Ca4 Ca Mca N. Maps to source symbol `Ca4CaMCaN`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Saucerman2008 - Reaction Calcium N Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_saucerman_bers_2008_saucermanbers2008_model",
"parameters": {
"model_path": "data/saucerman_2008_cytosol.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_saucerman_bers_2008_saucermanbers2008_model_state"
],
"from": "physiology_cellml_saucerman_bers_2008_saucermanbers2008_model.state"
},
{
"to": [
"visualisation.physiology_cellml_saucerman_bers_2008_saucermanbers2008_model_summary"
],
"from": "physiology_cellml_saucerman_bers_2008_saucermanbers2008_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_saucerman_bers_2008_saucermanbers2008_model_trajectory"
],
"from": "physiology_cellml_saucerman_bers_2008_saucermanbers2008_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_saucerman_bers_2008_saucermanbers2008_model_variable_labels"
],
"from": "physiology_cellml_saucerman_bers_2008_saucermanbers2008_model.variable_labels"
}
],
"package": "saucerman2008-reaction-calcium-n",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Saucerman, Bers, 2008. Public controls and outputs are mapped to real source symbols for calcium handling.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagesaucerman2008-reaction-calcium-n
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother