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Source-faithful physiology lab for Karagiannis, Popel, 2004. Public controls and outputs are mapped to real source symbols for source-model physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_c1dm2",
"label": "Initial C1dm2",
"maps_to": "physiology_cellml_karagiannis_popel_2004_karagiannispopel2004_model.initial_c1dm2",
"description": "Initial value for C1dm2. Maps to source symbol `C1dm2`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"molar"
]
},
{
"name": "initial_c1dmt1",
"label": "Initial C1dmt1",
"maps_to": "physiology_cellml_karagiannis_popel_2004_karagiannispopel2004_model.initial_c1dmt1",
"description": "Initial value for C1dmt1. Maps to source symbol `C1dmt1`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"molar"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_karagiannis_popel_2004_karagiannispopel2004_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_karagiannis_popel_2004_karagiannispopel2004_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_karagiannis_popel_2004_karagiannispopel2004_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_karagiannis_popel_2004_karagiannispopel2004_model.variable_labels"
},
{
"name": "c1dm2",
"label": "C1dm2",
"maps_to": "physiology_cellml_karagiannis_popel_2004_karagiannispopel2004_model.c1dm2",
"description": "C1dm2. Maps to source symbol `C1dm2`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "c1dmt1",
"label": "C1dmt1",
"maps_to": "physiology_cellml_karagiannis_popel_2004_karagiannispopel2004_model.c1dmt1",
"description": "C1dmt1. Maps to source symbol `C1dmt1`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "m2_c1",
"label": "M2 C1",
"maps_to": "physiology_cellml_karagiannis_popel_2004_karagiannispopel2004_model.m2_c1",
"description": "M2 C1. Maps to source symbol `M2C1`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "m2_p",
"label": "M2 P",
"maps_to": "physiology_cellml_karagiannis_popel_2004_karagiannispopel2004_model.m2_p",
"description": "M2 P. Maps to source symbol `M2P`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "m2_t2",
"label": "M2 T2",
"maps_to": "physiology_cellml_karagiannis_popel_2004_karagiannispopel2004_model.m2_t2",
"description": "M2 T2. Maps to source symbol `M2T2`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "m2_t2star",
"label": "M2 T2star",
"maps_to": "physiology_cellml_karagiannis_popel_2004_karagiannispopel2004_model.m2_t2star",
"description": "M2 T2star. Maps to source symbol `M2T2star`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Karagiannis2004 - Popel Mathematical Collagen Type I Proteolysis By Matrix Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_karagiannis_popel_2004_karagiannispopel2004_model",
"parameters": {
"model_path": "data/karagiannis_popel_2004.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_karagiannis_popel_2004_karagiannispopel2004_model_state"
],
"from": "physiology_cellml_karagiannis_popel_2004_karagiannispopel2004_model.state"
},
{
"to": [
"visualisation.physiology_cellml_karagiannis_popel_2004_karagiannispopel2004_model_summary"
],
"from": "physiology_cellml_karagiannis_popel_2004_karagiannispopel2004_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_karagiannis_popel_2004_karagiannispopel2004_model_trajectory"
],
"from": "physiology_cellml_karagiannis_popel_2004_karagiannispopel2004_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_karagiannis_popel_2004_karagiannispopel2004_model_variable_labels"
],
"from": "physiology_cellml_karagiannis_popel_2004_karagiannispopel2004_model.variable_labels"
}
],
"package": "karagiannis2004-popel-mathematical-collagen-type-i-prot-3d97e582",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Karagiannis, Popel, 2004. Public controls and outputs are mapped to real source symbols for source-model physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagekaragiannis2004-popel-mathematical-collagen-type-i-prot-3d97e582
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother