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Single-model lab wrapper for Ndairou2020 - early-stage transmission dynamics of COVID-19 in Wuhan. We propose a compartmental mathematical model for the spread of the COVID-19 disease with special focus on the transmissibility of super-spreaders individuals. It can be used to explore transmission dynamics and compare scenario outcomes across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "transmission_rate",
"label": "Transmission Rate",
"maps_to": "epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model.transmission_rate"
}
],
"outputs": [
{
"name": "state",
"label": "Model state",
"maps_to": "epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model.summary"
},
{
"name": "species_labels",
"label": "Species labels",
"maps_to": "epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model.species_labels"
},
{
"name": "exposed",
"label": "Exposed",
"maps_to": "epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model.exposed"
},
{
"name": "infectious",
"label": "Infectious",
"maps_to": "epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model.infectious"
},
{
"name": "hospitalised",
"label": "Hospitalised",
"maps_to": "epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model.hospitalised"
},
{
"name": "fatalities",
"label": "Fatalities",
"maps_to": "epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model.fatalities"
},
{
"name": "susceptible",
"label": "Susceptible",
"maps_to": "epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model.susceptible"
},
{
"name": "recovered",
"label": "Recovered",
"maps_to": "epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model.recovered"
},
{
"name": "super_spreaders",
"label": "Super spreaders",
"maps_to": "epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model.super_spreaders"
},
{
"name": "asymptomatic",
"label": "Asymptomatic",
"maps_to": "epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model.asymptomatic"
}
]
},
"title": "Ndairou2020 - early-stage transmission dynamics of COVID-19 in Wuhan Lab",
"models": [
{
"path": "models/core",
"alias": "epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model",
"parameters": {
"model_path": "data/BIOMD0000000958.xml",
"integration_step": 0.1
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model_state"
],
"from": "epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model.state"
},
{
"to": [
"visualisation.epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model_summary"
],
"from": "epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model.summary"
},
{
"to": [
"visualisation.epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model_species_labels"
],
"from": "epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model.species_labels"
}
],
"package": "ndairou2020-covid-transmission-wuhan",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Single-model lab wrapper for Ndairou2020 - early-stage transmission dynamics of COVID-19 in Wuhan. We propose a compartmental mathematical model for the spread of the COVID-19 disease with special focus on the transmissibility of super-spreaders individuals. It can be used to explore transmission dynamics and compare scenario outcomes across conditions.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagendairou2020-covid-transmission-wuhan
Created2026-05-15
Updated2026-06-13
biomodels_ebicuratedepidemiologyfaithfulsbmltelluriumvisualisationother