Wolf2001 - Mathematical Analysis Mechanism Autonomous Metabolic Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_oxygen",
        "label": "Initial Oxygen",
        "maps_to": "physiology_cellml_wolf_sohn_heinrich_kuriyama_2001_wolfsohnheinrichkuriyama2001_model.initial_oxygen",
        "description": "Initial value for Oxygen. Maps to source symbol `oxy`. Units: millimolar. Naming evidence: source metadata names `oxy` as `oxygen`.",
        "accepted_units": [
          "millimolar"
        ]
      },
      {
        "name": "initial_cytosolic_atp",
        "label": "Initial Cytosolic ATP",
        "maps_to": "physiology_cellml_wolf_sohn_heinrich_kuriyama_2001_wolfsohnheinrichkuriyama2001_model.initial_cytosolic_atp",
        "description": "Initial value for Cytosolic ATP. Maps to source symbol `A3_c`. Units: millimolar. Naming evidence: source metadata names `A3_c` as `cytosolic ATP`.",
        "accepted_units": [
          "millimolar"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_wolf_sohn_heinrich_kuriyama_2001_wolfsohnheinrichkuriyama2001_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_wolf_sohn_heinrich_kuriyama_2001_wolfsohnheinrichkuriyama2001_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_wolf_sohn_heinrich_kuriyama_2001_wolfsohnheinrichkuriyama2001_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_wolf_sohn_heinrich_kuriyama_2001_wolfsohnheinrichkuriyama2001_model.variable_labels"
      },
      {
        "name": "cytosolic_atp",
        "label": "Cytosolic ATP",
        "maps_to": "physiology_cellml_wolf_sohn_heinrich_kuriyama_2001_wolfsohnheinrichkuriyama2001_model.cytosolic_atp",
        "description": "Cytosolic ATP. Maps to source symbol `A3_c`. Units: millimolar. Naming evidence: source metadata names `A3_c` as `cytosolic ATP`."
      },
      {
        "name": "mitochondrial_atp",
        "label": "Mitochondrial ATP",
        "maps_to": "physiology_cellml_wolf_sohn_heinrich_kuriyama_2001_wolfsohnheinrichkuriyama2001_model.mitochondrial_atp",
        "description": "Mitochondrial ATP. Maps to source symbol `A3_m`. Units: millimolar. Naming evidence: source metadata names `A3_m` as `mitochondrial ATP`."
      },
      {
        "name": "acetyl_co_a",
        "label": "Acetyl Co A",
        "maps_to": "physiology_cellml_wolf_sohn_heinrich_kuriyama_2001_wolfsohnheinrichkuriyama2001_model.acetyl_co_a",
        "description": "Acetyl Co A. Maps to source symbol `aco`. Units: millimolar. Naming evidence: source metadata names `aco` as `acetyl-CoA`."
      },
      {
        "name": "adenylyl_sulfate",
        "label": "Adenylyl Sulfate",
        "maps_to": "physiology_cellml_wolf_sohn_heinrich_kuriyama_2001_wolfsohnheinrichkuriyama2001_model.adenylyl_sulfate",
        "description": "Adenylyl Sulfate. Maps to source symbol `aps`. Units: millimolar. Naming evidence: source metadata names `aps` as `adenylyl sulfate`."
      },
      {
        "name": "nadh",
        "label": "Nadh",
        "maps_to": "physiology_cellml_wolf_sohn_heinrich_kuriyama_2001_wolfsohnheinrichkuriyama2001_model.nadh",
        "description": "Nadh. Maps to source symbol `N2`. Units: millimolar. Naming evidence: source metadata names `N2` as `NADH`."
      },
      {
        "name": "intermediate_of_the_citrate_acid_cycle",
        "label": "Intermediate Of The Citrate Acid Cycle",
        "maps_to": "physiology_cellml_wolf_sohn_heinrich_kuriyama_2001_wolfsohnheinrichkuriyama2001_model.intermediate_of_the_citrate_acid_cycle",
        "description": "Intermediate Of The Citrate Acid Cycle. Maps to source symbol `S1`. Units: millimolar. Naming evidence: source metadata names `S1` as `intermediate of the citrate acid cycle`."
      }
    ]
  },
  "title": "Wolf2001 - Mathematical Analysis Mechanism Autonomous Metabolic Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "physiology_cellml_wolf_sohn_heinrich_kuriyama_2001_wolfsohnheinrichkuriyama2001_model",
      "parameters": {
        "model_path": "data/wolf_sohn_heinrich_kuriyama_2001.cellml",
        "integration_step": 0.01
      }
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_wolf_sohn_heinrich_kuriyama_2001_wolfsohnheinrichkuriyama2001_model_state"
      ],
      "from": "physiology_cellml_wolf_sohn_heinrich_kuriyama_2001_wolfsohnheinrichkuriyama2001_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_wolf_sohn_heinrich_kuriyama_2001_wolfsohnheinrichkuriyama2001_model_summary"
      ],
      "from": "physiology_cellml_wolf_sohn_heinrich_kuriyama_2001_wolfsohnheinrichkuriyama2001_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_wolf_sohn_heinrich_kuriyama_2001_wolfsohnheinrichkuriyama2001_model_trajectory"
      ],
      "from": "physiology_cellml_wolf_sohn_heinrich_kuriyama_2001_wolfsohnheinrichkuriyama2001_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_wolf_sohn_heinrich_kuriyama_2001_wolfsohnheinrichkuriyama2001_model_variable_labels"
      ],
      "from": "physiology_cellml_wolf_sohn_heinrich_kuriyama_2001_wolfsohnheinrichkuriyama2001_model.variable_labels"
    }
  ],
  "package": "wolf2001-mathematical-analysis-mechanism-autonomous-metabolic",
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "version": "1.0.0",
  "description": "Source-faithful physiology lab for Wolf, Sohn, Heinrich, Kuriyama, 2001. Public controls and outputs are mapped to real source symbols for respiratory physiology.",
  "schema_version": "2.0"
}