Jeon2018 - Enzyme clustering in Glucose metabolism Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_glycolysis_state_1",
        "units": "native SBML value",
        "default": 0.01,
        "maps_to": "metabolism_sbml_jeon2018_enzyme_clustering_in_glucose_metabolism_biomd0000001055_model.initial_glycolysis_state_1",
        "description": "Initial condition for glycolysis state 1. Maps to bundled SBML symbol `Glucose`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_fructose_6_phosphate",
        "units": "native SBML value",
        "default": 0.01,
        "maps_to": "metabolism_sbml_jeon2018_enzyme_clustering_in_glucose_metabolism_biomd0000001055_model.initial_fructose_6_phosphate",
        "description": "Initial condition for fructose 6 phosphate. Maps to bundled SBML symbol `Fructose_6_Phosphate`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_fructose_1_6_bisphosphate",
        "units": "native SBML value",
        "default": 0.01,
        "maps_to": "metabolism_sbml_jeon2018_enzyme_clustering_in_glucose_metabolism_biomd0000001055_model.initial_fructose_1_6_bisphosphate",
        "description": "Initial condition for fructose 1 6 bisphosphate. Maps to bundled SBML symbol `Fructose_1_6_Bisphosphate`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_observable_3_phosphoglycerate",
        "units": "native SBML value",
        "default": 0.01,
        "maps_to": "metabolism_sbml_jeon2018_enzyme_clustering_in_glucose_metabolism_biomd0000001055_model.initial_observable_3_phosphoglycerate",
        "description": "Initial condition for observable 3 phosphoglycerate. Maps to bundled SBML symbol `_3_Phosphoglycerate`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_glycolysis_state_5",
        "units": "native SBML value",
        "default": 0.01,
        "maps_to": "metabolism_sbml_jeon2018_enzyme_clustering_in_glucose_metabolism_biomd0000001055_model.initial_glycolysis_state_5",
        "description": "Initial condition for glycolysis state 5. Maps to bundled SBML symbol `Phosphoenolpyruvate`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      }
    ],
    "outputs": [
      {
        "name": "glycolysis_state_1",
        "maps_to": "metabolism_sbml_jeon2018_enzyme_clustering_in_glucose_metabolism_biomd0000001055_model.glycolysis_state_1"
      },
      {
        "name": "fructose_6_phosphate",
        "maps_to": "metabolism_sbml_jeon2018_enzyme_clustering_in_glucose_metabolism_biomd0000001055_model.fructose_6_phosphate"
      },
      {
        "name": "fructose_1_6_bisphosphate",
        "maps_to": "metabolism_sbml_jeon2018_enzyme_clustering_in_glucose_metabolism_biomd0000001055_model.fructose_1_6_bisphosphate"
      },
      {
        "name": "observable_3_phosphoglycerate",
        "maps_to": "metabolism_sbml_jeon2018_enzyme_clustering_in_glucose_metabolism_biomd0000001055_model.observable_3_phosphoglycerate"
      },
      {
        "name": "glycolysis_state_5",
        "maps_to": "metabolism_sbml_jeon2018_enzyme_clustering_in_glucose_metabolism_biomd0000001055_model.glycolysis_state_5"
      },
      {
        "name": "observable_values",
        "maps_to": "metabolism_sbml_jeon2018_enzyme_clustering_in_glucose_metabolism_biomd0000001055_model.observable_values"
      },
      {
        "name": "run_summary",
        "maps_to": "metabolism_sbml_jeon2018_enzyme_clustering_in_glucose_metabolism_biomd0000001055_model.run_summary"
      },
      {
        "name": "observable_labels",
        "maps_to": "metabolism_sbml_jeon2018_enzyme_clustering_in_glucose_metabolism_biomd0000001055_model.observable_labels"
      }
    ]
  },
  "title": "Jeon2018 - Enzyme clustering in Glucose metabolism Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "metabolism_sbml_jeon2018_enzyme_clustering_in_glucose_metabolism_biomd0000001055_model",
      "parameters": {
        "model_path": "data/BIOMD0000001055.xml",
        "integration_step": 0.1
      }
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.metabolism_sbml_jeon2018_enzyme_clustering_in_glucose_metabolism_biomd0000001055_model_observable_values"
      ],
      "from": "metabolism_sbml_jeon2018_enzyme_clustering_in_glucose_metabolism_biomd0000001055_model.observable_values"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_jeon2018_enzyme_clustering_in_glucose_metabolism_biomd0000001055_model_run_summary"
      ],
      "from": "metabolism_sbml_jeon2018_enzyme_clustering_in_glucose_metabolism_biomd0000001055_model.run_summary"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_jeon2018_enzyme_clustering_in_glucose_metabolism_biomd0000001055_model_observable_labels"
      ],
      "from": "metabolism_sbml_jeon2018_enzyme_clustering_in_glucose_metabolism_biomd0000001055_model.observable_labels"
    }
  ],
  "package": "jeon2018-enzyme-clustering-in-glucose-metabolism",
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "version": "1.0.0",
  "description": "Miji Jeon, Hye-Won Kang & Songon An. A Mathematical Model for Enzyme Clustering in Glucose Metabolism.",
  "schema_version": "2.0"
}