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Curated microbiology lab for Bier2000_GlycolyticOscillation. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_glucose_pool_1",
"maps_to": "bier2000_yeast_glycolytic_oscillation.initial_glucose_pool_1"
},
{
"name": "initial_glucose_pool_2",
"maps_to": "bier2000_yeast_glycolytic_oscillation.initial_glucose_pool_2"
}
],
"outputs": [
{
"name": "state",
"maps_to": "bier2000_yeast_glycolytic_oscillation.state"
},
{
"name": "summary",
"maps_to": "bier2000_yeast_glycolytic_oscillation.summary"
},
{
"name": "species_labels",
"maps_to": "bier2000_yeast_glycolytic_oscillation.species_labels"
},
{
"name": "glucose_pool_1",
"maps_to": "bier2000_yeast_glycolytic_oscillation.glucose_pool_1"
},
{
"name": "atp_pool_1",
"maps_to": "bier2000_yeast_glycolytic_oscillation.atp_pool_1"
},
{
"name": "glucose_pool_2",
"maps_to": "bier2000_yeast_glycolytic_oscillation.glucose_pool_2"
},
{
"name": "atp_pool_2",
"maps_to": "bier2000_yeast_glycolytic_oscillation.atp_pool_2"
}
]
},
"title": "Bier2000_GlycolyticOscillation Lab",
"models": [
{
"path": "models/core",
"alias": "bier2000_yeast_glycolytic_oscillation"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.bier2000_yeast_glycolytic_oscillation_state"
],
"from": "bier2000_yeast_glycolytic_oscillation.state"
},
{
"to": [
"visualisation.bier2000_yeast_glycolytic_oscillation_summary"
],
"from": "bier2000_yeast_glycolytic_oscillation.summary"
},
{
"to": [
"visualisation.bier2000_yeast_glycolytic_oscillation_species_labels"
],
"from": "bier2000_yeast_glycolytic_oscillation.species_labels"
},
{
"to": [
"visualisation.bier2000_yeast_glycolytic_oscillation_glucose_pool_1"
],
"from": "bier2000_yeast_glycolytic_oscillation.glucose_pool_1"
},
{
"to": [
"visualisation.bier2000_yeast_glycolytic_oscillation_atp_pool_1"
],
"from": "bier2000_yeast_glycolytic_oscillation.atp_pool_1"
},
{
"to": [
"visualisation.bier2000_yeast_glycolytic_oscillation_glucose_pool_2"
],
"from": "bier2000_yeast_glycolytic_oscillation.glucose_pool_2"
},
{
"to": [
"visualisation.bier2000_yeast_glycolytic_oscillation_atp_pool_2"
],
"from": "bier2000_yeast_glycolytic_oscillation.atp_pool_2"
}
],
"package": "bier2000-yeast-glycolytic-oscillation",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Curated microbiology lab for Bier2000_GlycolyticOscillation. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step0.01
Runs
Total0
Completed0
Failed0
Metadata
Packagebier2000-yeast-glycolytic-oscillation
Created2026-05-15
Updated2026-06-13
microbiologysbmlbiomodels_ebifaithfultelluriumvisualisationother