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Source-faithful physiology lab for Garny, Kohl, Hunter, Boyett, Noble, 2003. Public controls and outputs are mapped to real source symbols for electrophysiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_membrane_voltage",
"label": "Initial Membrane Voltage",
"maps_to": "physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model.initial_membrane_voltage",
"description": "Initial value for Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"millivolt"
]
},
{
"name": "initial_sodium_current_h_gate_h1",
"label": "Initial Sodium Current H Gate H1",
"maps_to": "physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model.initial_sodium_current_h_gate_h1",
"description": "Initial value for Sodium Current H Gate H1. Maps to source symbol `h1`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"dimensionless"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model.variable_labels"
},
{
"name": "sodium_current",
"label": "Sodium Current",
"maps_to": "physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model.sodium_current",
"description": "Sodium Current. Maps to source symbol `i_p`. Units: nanoA. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "sodium_current_i_p_max",
"label": "Sodium Current I P Max",
"maps_to": "physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model.sodium_current_i_p_max",
"description": "Sodium Current I P Max. Maps to source symbol `i_p_max`. Units: nanoA. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "sodium_current_i_p_max_centre_0_d",
"label": "Sodium Current I P Max Centre 0 D",
"maps_to": "physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model.sodium_current_i_p_max_centre_0_d",
"description": "Sodium Current I P Max Centre 0 D. Maps to source symbol `i_p_max_Centre_0DCapable`. Units: nanoA. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "sodium_current_i_p_max_centre_1_d",
"label": "Sodium Current I P Max Centre 1 D",
"maps_to": "physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model.sodium_current_i_p_max_centre_1_d",
"description": "Sodium Current I P Max Centre 1 D. Maps to source symbol `i_p_max_Centre_1DCapable`. Units: nanoA. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "sodium_current_i_p_max_centre_pub",
"label": "Sodium Current I P Max Centre Pub",
"maps_to": "physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model.sodium_current_i_p_max_centre_pub",
"description": "Sodium Current I P Max Centre Pub. Maps to source symbol `i_p_max_Centre_Published`. Units: nanoA. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "sodium_current_i_p_max_periphery",
"label": "Sodium Current I P Max Periphery",
"maps_to": "physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model.sodium_current_i_p_max_periphery",
"description": "Sodium Current I P Max Periphery. Maps to source symbol `i_p_max_Periphery_Published`. Units: nanoA. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Garny2003 - Mathematical Action Potentials Periphery Sinoatrial Node Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model",
"parameters": {
"model_path": "data/garny_kohl_hunter_boyett_noble_2003.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model_state"
],
"from": "physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model.state"
},
{
"to": [
"visualisation.physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model_summary"
],
"from": "physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model_trajectory"
],
"from": "physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model_variable_labels"
],
"from": "physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model.variable_labels"
}
],
"package": "garny2003-mathematical-action-potentials-periphery-sino-e4b8895e",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Garny, Kohl, Hunter, Boyett, Noble, 2003. Public controls and outputs are mapped to real source symbols for electrophysiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagegarny2003-mathematical-action-potentials-periphery-sino-e4b8895e
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother