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Source-faithful physiology lab for Cell viability models for tissue exposed to thermal ablation temperatures.. Public controls and outputs are mapped to real source symbols for source-model physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_rate_kinetics_c",
"label": "Initial Rate Kinetics C",
"maps_to": "physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model.initial_rate_kinetics_c",
"description": "Initial value for Rate Kinetics C. Maps to source symbol `C`. Units: conc. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"conc"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model.variable_labels"
},
{
"name": "rate_kinetics_c",
"label": "Rate Kinetics C",
"maps_to": "physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model.rate_kinetics_c",
"description": "Rate Kinetics C. Maps to source symbol `C`. Units: conc. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "rate_kinetics_a",
"label": "Rate Kinetics A",
"maps_to": "physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model.rate_kinetics_a",
"description": "Rate Kinetics A. Maps to source symbol `A`. Units: per_sec. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "rate_kinetics_e",
"label": "Rate Kinetics E",
"maps_to": "physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model.rate_kinetics_e",
"description": "Rate Kinetics E. Maps to source symbol `E`. Units: J_per_mol. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "rate_kinetics_k",
"label": "Rate Kinetics K",
"maps_to": "physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model.rate_kinetics_k",
"description": "Rate Kinetics K. Maps to source symbol `k`. Units: per_sec. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "rate_kinetics_r",
"label": "Rate Kinetics R",
"maps_to": "physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model.rate_kinetics_r",
"description": "Rate Kinetics R. Maps to source symbol `R`. Units: J_per_mol_per_K. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "rate_kinetics_t",
"label": "Rate Kinetics T",
"maps_to": "physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model.rate_kinetics_t",
"description": "Rate Kinetics T. Maps to source symbol `T`. Units: kelvin. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Physiome 1b5 - Cell Viability Tissue Exposed Thermal Ablation Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model",
"parameters": {
"model_path": "data/arrhenius-cell-death.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model_state"
],
"from": "physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model.state"
},
{
"to": [
"visualisation.physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model_summary"
],
"from": "physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model_trajectory"
],
"from": "physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model_variable_labels"
],
"from": "physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model.variable_labels"
}
],
"package": "physiome1b5-cell-viability-tissue-exposed-thermal-ablation",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Cell viability models for tissue exposed to thermal ablation temperatures.. Public controls and outputs are mapped to real source symbols for source-model physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagephysiome1b5-cell-viability-tissue-exposed-thermal-ablation
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother