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Giantsos-Adams2013 - Growth of glycocalyxunder static conditions This model is described in the article: Heparan Sulfate Regrowth Profiles Under Laminar Shear Flow Following Enzymatic Degradation. It can be used to explore systemsbiology giantsosadams2013 growth of glycocalyx under dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_lysosome",
"label": "Initial Lysosome",
"maps_to": "systemsbiology_sbml_giantsosadams2013_growth_of_glycocalyx_under_sta_biomd0000000830_model.initial_lysosome",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `s4`."
},
{
"name": "initial_late_endosome",
"label": "Initial Late Endosome",
"maps_to": "systemsbiology_sbml_giantsosadams2013_growth_of_glycocalyx_under_sta_biomd0000000830_model.initial_late_endosome",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `s3`."
},
{
"name": "initial_early_endosome",
"label": "Initial Early Endosome",
"maps_to": "systemsbiology_sbml_giantsosadams2013_growth_of_glycocalyx_under_sta_biomd0000000830_model.initial_early_endosome",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `s2`."
},
{
"name": "initial_hs_surface",
"label": "Initial Hs Surface",
"maps_to": "systemsbiology_sbml_giantsosadams2013_growth_of_glycocalyx_under_sta_biomd0000000830_model.initial_hs_surface",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `s1`."
},
{
"name": "initial_golgi",
"label": "Initial Golgi",
"maps_to": "systemsbiology_sbml_giantsosadams2013_growth_of_glycocalyx_under_sta_biomd0000000830_model.initial_golgi",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `s6`."
},
{
"name": "initial_shedding",
"label": "Initial Shedding",
"maps_to": "systemsbiology_sbml_giantsosadams2013_growth_of_glycocalyx_under_sta_biomd0000000830_model.initial_shedding",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `shedding`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_giantsosadams2013_growth_of_glycocalyx_under_sta_biomd0000000830_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_giantsosadams2013_growth_of_glycocalyx_under_sta_biomd0000000830_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_giantsosadams2013_growth_of_glycocalyx_under_sta_biomd0000000830_model.species_labels"
},
{
"name": "lysosome",
"maps_to": "systemsbiology_sbml_giantsosadams2013_growth_of_glycocalyx_under_sta_biomd0000000830_model.lysosome"
},
{
"name": "late_endosome",
"maps_to": "systemsbiology_sbml_giantsosadams2013_growth_of_glycocalyx_under_sta_biomd0000000830_model.late_endosome"
},
{
"name": "early_endosome",
"maps_to": "systemsbiology_sbml_giantsosadams2013_growth_of_glycocalyx_under_sta_biomd0000000830_model.early_endosome"
},
{
"name": "hs_surface",
"maps_to": "systemsbiology_sbml_giantsosadams2013_growth_of_glycocalyx_under_sta_biomd0000000830_model.hs_surface"
},
{
"name": "golgi",
"maps_to": "systemsbiology_sbml_giantsosadams2013_growth_of_glycocalyx_under_sta_biomd0000000830_model.golgi"
},
{
"name": "shedding",
"maps_to": "systemsbiology_sbml_giantsosadams2013_growth_of_glycocalyx_under_sta_biomd0000000830_model.shedding"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Giantsosadams2013 Growth Of Glycocalyx Under Static Conditions Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_giantsosadams2013_growth_of_glycocalyx_under_sta_biomd0000000830_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_giantsosadams2013_growth_of_glycocalyx_under_sta_biomd0000000830_model_state"
],
"from": "systemsbiology_sbml_giantsosadams2013_growth_of_glycocalyx_under_sta_biomd0000000830_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_giantsosadams2013_growth_of_glycocalyx_under_sta_biomd0000000830_model_summary"
],
"from": "systemsbiology_sbml_giantsosadams2013_growth_of_glycocalyx_under_sta_biomd0000000830_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_giantsosadams2013_growth_of_glycocalyx_under_sta_biomd0000000830_model_species_labels"
],
"from": "systemsbiology_sbml_giantsosadams2013_growth_of_glycocalyx_under_sta_biomd0000000830_model.species_labels"
}
],
"package": "giantsosadams2013-growth-of-glycocalyx-under-static-conditions",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Giantsos-Adams2013 - Growth of glycocalyxunder static conditions This model is described in the article: Heparan Sulfate Regrowth Profiles Under Laminar Shear Flow Following Enzymatic Degradation. It can be used to explore systemsbiology giantsosadams2013 growth of glycocalyx under dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagegiantsosadams2013-growth-of-glycocalyx-under-static-conditions
Created2026-05-17
Updated2026-06-13
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother