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Clean Biosimulant lab for systems signaling model: Fujita2010_Akt_Signalling_NGF. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_p_akt_scale_factor_level",
"label": "P AKT Scale Factor",
"maps_to": "signaling_sbml_fujita2010_akt_signalling_ngf_biomd0000000263_model.initial_p_akt_scale_factor_level",
"description": "P AKT Scale Factor source parameter. Maps to SBML symbol `pAkt_scaleFactor` and preserves the bundled default."
},
{
"name": "initial_nerve_growth_factor",
"label": "Initial nerve growth factor",
"maps_to": "signaling_sbml_fujita2010_akt_signalling_ngf_biomd0000000263_model.initial_nerve_growth_factor",
"description": "Initial level of nerve growth factor. Maps to SBML symbol `NGF`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_pro_trk_a",
"label": "Initial Pro Trk A",
"maps_to": "signaling_sbml_fujita2010_akt_signalling_ngf_biomd0000000263_model.initial_pro_trk_a",
"description": "Initial level of Pro Trk A. Maps to SBML symbol `pro_TrkA`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "p_trk_a_akt",
"label": "P Trk A AKT",
"maps_to": "signaling_sbml_fujita2010_akt_signalling_ngf_biomd0000000263_model.p_trk_a_akt",
"description": "P Trk A AKT. Maps to SBML symbol `pTrkA_Akt` and is emitted in native SBML units."
},
{
"name": "akt",
"label": "AKT",
"maps_to": "signaling_sbml_fujita2010_akt_signalling_ngf_biomd0000000263_model.akt",
"description": "AKT. Maps to SBML symbol `Akt` and is emitted in native SBML units."
},
{
"name": "source_defined_pakt_state",
"label": "source-defined PAKT state",
"maps_to": "signaling_sbml_fujita2010_akt_signalling_ngf_biomd0000000263_model.source_defined_pakt_state",
"description": "source-defined PAKT state. Maps to SBML symbol `pAkt` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_fujita2010_akt_signalling_ngf_biomd0000000263_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_fujita2010_akt_signalling_ngf_biomd0000000263_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_fujita2010_akt_signalling_ngf_biomd0000000263_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"pi3k-akt",
"neuroscience"
],
"title": "Fujita2010_Akt_Signalling_NGF Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_fujita2010_akt_signalling_ngf_biomd0000000263_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_fujita2010_akt_signalling_ngf_biomd0000000263_model_state"
],
"from": "signaling_sbml_fujita2010_akt_signalling_ngf_biomd0000000263_model.state"
},
{
"to": [
"visualisation.signaling_sbml_fujita2010_akt_signalling_ngf_biomd0000000263_model_summary"
],
"from": "signaling_sbml_fujita2010_akt_signalling_ngf_biomd0000000263_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_fujita2010_akt_signalling_ngf_biomd0000000263_model_species_labels"
],
"from": "signaling_sbml_fujita2010_akt_signalling_ngf_biomd0000000263_model.species_labels"
}
],
"package": "fujita2010-akt-signalling-ngf",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for systems signaling model: Fujita2010_Akt_Signalling_NGF. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagefujita2010-akt-signalling-ngf
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebipi3k-aktneurosciencevisualisationother