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This a model from the article: Data assimilation constrains new connections and components in a complex, eukaryotic circadian clock model. Pokhilko A, Hodge SK, Stratford K, Knox K, Edwards KD, Thomso.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_c_l_m",
"label": "Initial C L M",
"maps_to": "systemsbiology_sbml_pokhilko2010_circclock_biomd0000000273_model.initial_c_l_m",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `cL_m`."
},
{
"name": "initial_model_state_c_p",
"label": "Initial Model State C P",
"maps_to": "systemsbiology_sbml_pokhilko2010_circclock_biomd0000000273_model.initial_model_state_c_p",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `cP`."
},
{
"name": "initial_model_state_c_l",
"label": "Initial Model State C L",
"maps_to": "systemsbiology_sbml_pokhilko2010_circclock_biomd0000000273_model.initial_model_state_c_l",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `cL`."
},
{
"name": "initial_model_state_c_t",
"label": "Initial Model State C T",
"maps_to": "systemsbiology_sbml_pokhilko2010_circclock_biomd0000000273_model.initial_model_state_c_t",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `cT`."
},
{
"name": "initial_c_p9_m",
"label": "Initial C P9 M",
"maps_to": "systemsbiology_sbml_pokhilko2010_circclock_biomd0000000273_model.initial_c_p9_m",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `cP9_m`."
},
{
"name": "initial_c_ztl",
"label": "Initial C Ztl",
"maps_to": "systemsbiology_sbml_pokhilko2010_circclock_biomd0000000273_model.initial_c_ztl",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `cZTL`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_pokhilko2010_circclock_biomd0000000273_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_pokhilko2010_circclock_biomd0000000273_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_pokhilko2010_circclock_biomd0000000273_model.species_labels"
},
{
"name": "c_l_m",
"maps_to": "systemsbiology_sbml_pokhilko2010_circclock_biomd0000000273_model.c_l_m"
},
{
"name": "c_p",
"maps_to": "systemsbiology_sbml_pokhilko2010_circclock_biomd0000000273_model.c_p"
},
{
"name": "c_l",
"maps_to": "systemsbiology_sbml_pokhilko2010_circclock_biomd0000000273_model.c_l"
},
{
"name": "c_t",
"maps_to": "systemsbiology_sbml_pokhilko2010_circclock_biomd0000000273_model.c_t"
},
{
"name": "c_p9_m",
"maps_to": "systemsbiology_sbml_pokhilko2010_circclock_biomd0000000273_model.c_p9_m"
},
{
"name": "c_ztl",
"maps_to": "systemsbiology_sbml_pokhilko2010_circclock_biomd0000000273_model.c_ztl"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Pokhilko2010 Circclock Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_pokhilko2010_circclock_biomd0000000273_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_pokhilko2010_circclock_biomd0000000273_model_state"
],
"from": "systemsbiology_sbml_pokhilko2010_circclock_biomd0000000273_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_pokhilko2010_circclock_biomd0000000273_model_summary"
],
"from": "systemsbiology_sbml_pokhilko2010_circclock_biomd0000000273_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_pokhilko2010_circclock_biomd0000000273_model_species_labels"
],
"from": "systemsbiology_sbml_pokhilko2010_circclock_biomd0000000273_model.species_labels"
}
],
"package": "pokhilko2010-circclock",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "This a model from the article: Data assimilation constrains new connections and components in a complex, eukaryotic circadian clock model. Pokhilko A, Hodge SK, Stratford K, Knox K, Edwards KD, Thomso.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagepokhilko2010-circclock
Created2026-05-17
Updated2026-06-13
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother