About lab
One published Lab
Build with this Lab. Run it anywhere.
Use the same immutable release locally or through managed cloud execution, with its exact version and provenance preserved.
Preparing exact examples…
Aubert2005 - Interaction between astrocytesand neurons on energy metabolism Enocded non-curated model. Issues: - Confusing equations A.41 and A.42 - Missing values for parameters Vv,0 and dHb,0 This m.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_neuronal_adp",
"units": "native SBML value",
"default": 0.0119296850858459,
"maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.initial_neuronal_adp",
"description": "Initial condition for neuronal adp. Maps to bundled SBML symbol `ADPn`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
},
{
"name": "initial_neuronal_amp",
"units": "native SBML value",
"default": 0.0000703149141538795,
"maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.initial_neuronal_amp",
"description": "Initial condition for neuronal amp. Maps to bundled SBML symbol `AMPn`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
},
{
"name": "initial_brain_energy_state_3",
"units": "native SBML value",
"default": 0.0119296850858464,
"maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.initial_brain_energy_state_3",
"description": "Initial condition for brain energy state 3. Maps to bundled SBML symbol `ADPg`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
},
{
"name": "initial_brain_energy_state_4",
"units": "native SBML value",
"default": 0.0000703149141538795,
"maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.initial_brain_energy_state_4",
"description": "Initial condition for brain energy state 4. Maps to bundled SBML symbol `AMPg`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
},
{
"name": "initial_brain_energy_state_5",
"units": "native SBML value",
"default": 0.0122222222222222,
"maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.initial_brain_energy_state_5",
"description": "Initial condition for brain energy state 5. Maps to bundled SBML symbol `rcn`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
}
],
"outputs": [
{
"name": "neuronal_adp",
"maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.neuronal_adp"
},
{
"name": "neuronal_amp",
"maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.neuronal_amp"
},
{
"name": "brain_energy_state_3",
"maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.brain_energy_state_3"
},
{
"name": "brain_energy_state_4",
"maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.brain_energy_state_4"
},
{
"name": "brain_energy_state_5",
"maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.brain_energy_state_5"
},
{
"name": "observable_values",
"maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.observable_values"
},
{
"name": "run_summary",
"maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.run_summary"
},
{
"name": "observable_labels",
"maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.observable_labels"
}
]
},
"title": "Aubert2005 - Interaction between astrocytes and neurons on energy metabolism Lab",
"models": [
{
"path": "models/core",
"alias": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model",
"parameters": {
"model_path": "data/MODEL1411210000.xml",
"integration_step": 0.1
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model_observable_values"
],
"from": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.observable_values"
},
{
"to": [
"visualisation.metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model_run_summary"
],
"from": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.run_summary"
},
{
"to": [
"visualisation.metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model_observable_labels"
],
"from": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.observable_labels"
}
],
"package": "aubert2005-interaction-between-astrocytes-and-neurons-o-04ee33cf",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"version": "1.0.0",
"description": "Aubert2005 - Interaction between astrocytesand neurons on energy metabolism Enocded non-curated model. Issues: - Confusing equations A.41 and A.42 - Missing values for parameters Vv,0 and dHb,0 This m.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packageaubert2005-interaction-between-astrocytes-and-neurons-o-04ee33cf
Created2026-05-15
Updated2026-06-13
biomodels_ebifaithfulmetabolismodesbmltelluriumvisualisationother