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Source-faithful physiology lab for NAD labelling dynamics. Public controls and outputs are mapped to real source symbols for glucose-insulin physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_glucose_l",
"label": "Initial Glucose L",
"maps_to": "physiology_sbml_nad_labelling_dynamics_model2409150001_model.initial_glucose_l",
"description": "Initial value for Glucose L. Maps to source symbol `Glucose_L`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "initial_atp_concentration",
"label": "Initial ATP Concentration",
"maps_to": "physiology_sbml_nad_labelling_dynamics_model2409150001_model.initial_atp_concentration",
"description": "Initial value for ATP Concentration. Maps to source symbol `ATP`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_sbml_nad_labelling_dynamics_model2409150001_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_sbml_nad_labelling_dynamics_model2409150001_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_sbml_nad_labelling_dynamics_model2409150001_model.trajectory"
},
{
"name": "species_labels",
"label": "Observable Labels",
"maps_to": "physiology_sbml_nad_labelling_dynamics_model2409150001_model.species_labels"
},
{
"name": "glucose_l",
"label": "Glucose L",
"maps_to": "physiology_sbml_nad_labelling_dynamics_model2409150001_model.glucose_l",
"description": "Glucose L. Maps to source symbol `Glucose_L`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "atp_concentration",
"label": "ATP Concentration",
"maps_to": "physiology_sbml_nad_labelling_dynamics_model2409150001_model.atp_concentration",
"description": "ATP Concentration. Maps to source symbol `ATP`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "atp_l",
"label": "ATP L",
"maps_to": "physiology_sbml_nad_labelling_dynamics_model2409150001_model.atp_l",
"description": "ATP L. Maps to source symbol `ATP_L`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "glucose",
"label": "Glucose",
"maps_to": "physiology_sbml_nad_labelling_dynamics_model2409150001_model.glucose",
"description": "Glucose. Maps to source symbol `Glucose`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "nad",
"label": "Nad",
"maps_to": "physiology_sbml_nad_labelling_dynamics_model2409150001_model.nad",
"description": "Nad. Maps to source symbol `NAD`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "nad_bound",
"label": "Nad Bound",
"maps_to": "physiology_sbml_nad_labelling_dynamics_model2409150001_model.nad_bound",
"description": "Nad Bound. Maps to source symbol `NAD_bound`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Biomodels model2409150001 - Nad Labelling Dynamics Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_sbml_nad_labelling_dynamics_model2409150001_model",
"parameters": {
"model_path": "data/MODEL2409150001.xml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_sbml_nad_labelling_dynamics_model2409150001_model_state"
],
"from": "physiology_sbml_nad_labelling_dynamics_model2409150001_model.state"
},
{
"to": [
"visualisation.physiology_sbml_nad_labelling_dynamics_model2409150001_model_summary"
],
"from": "physiology_sbml_nad_labelling_dynamics_model2409150001_model.summary"
},
{
"to": [
"visualisation.physiology_sbml_nad_labelling_dynamics_model2409150001_model_trajectory"
],
"from": "physiology_sbml_nad_labelling_dynamics_model2409150001_model.trajectory"
},
{
"to": [
"visualisation.physiology_sbml_nad_labelling_dynamics_model2409150001_model_species_labels"
],
"from": "physiology_sbml_nad_labelling_dynamics_model2409150001_model.species_labels"
}
],
"package": "biomodelsmodel2409150001-nad-labelling-dynamics",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for NAD labelling dynamics. Public controls and outputs are mapped to real source symbols for glucose-insulin physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagebiomodelsmodel2409150001-nad-labelling-dynamics
Created2026-05-23
Updated2026-06-13
physiologysbmlbiomodels_ebifaithfulvisualisationother