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Zhou2015 - Circadian clock with immuneregulator NPR1 Arabidopsis clock model modified fromP2012 (Pokhilko et al., 2013 - BIOMD0000000445 )model to include the master immune regulator NPR1 coupling to. It can be used to explore immune response dynamics and compare pathway-level behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_cabar_m",
"label": "Initial Cabar M",
"units": "native source value",
"default": 0.856,
"maps_to": "immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model.initial_cabar_m",
"description": "Initial Cabar M. Sets the initial value of bundled SBML species `species_1`."
},
{
"name": "initial_unresolved_source_observable_2",
"label": "Initial Unresolved Source Observable 2",
"units": "native source value",
"default": 0.4027,
"maps_to": "immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model.initial_unresolved_source_observable_2",
"description": "Initial Unresolved Source Observable 2. Sets the initial value of bundled SBML species `species_2`."
},
{
"name": "initial_unresolved_source_observable_3",
"label": "Initial Unresolved Source Observable 3",
"units": "native source value",
"default": 0.2362,
"maps_to": "immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model.initial_unresolved_source_observable_3",
"description": "Initial Unresolved Source Observable 3. Sets the initial value of bundled SBML species `species_3`."
},
{
"name": "initial_unresolved_source_observable_4",
"label": "Initial Unresolved Source Observable 4",
"units": "native source value",
"default": 0.2843,
"maps_to": "immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model.initial_unresolved_source_observable_4",
"description": "Initial Unresolved Source Observable 4. Sets the initial value of bundled SBML species `species_4`."
},
{
"name": "initial_unresolved_signaling_observable_2",
"label": "Initial Unresolved Signaling Observable 2",
"units": "native source value",
"default": 1.3143,
"maps_to": "immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model.initial_unresolved_signaling_observable_2",
"description": "Initial Unresolved Signaling Observable 2. Sets the initial value of bundled SBML species `cCOP1c`."
}
],
"outputs": [
{
"name": "cabar_m",
"maps_to": "immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model.cabar_m"
},
{
"name": "unresolved_source_observable_2",
"maps_to": "immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model.unresolved_source_observable_2"
},
{
"name": "unresolved_source_observable_3",
"maps_to": "immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model.unresolved_source_observable_3"
},
{
"name": "unresolved_source_observable_4",
"maps_to": "immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model.unresolved_source_observable_4"
},
{
"name": "unresolved_signaling_observable_2",
"maps_to": "immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model.unresolved_signaling_observable_2"
},
{
"name": "state",
"maps_to": "immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model.state"
},
{
"name": "summary",
"maps_to": "immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model.summary"
},
{
"name": "species_labels",
"maps_to": "immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model.species_labels"
}
]
},
"title": "Zhou2015 - Circadian clock with immune regulator NPR1 Lab",
"models": [
{
"path": "models/core",
"alias": "immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model_state"
],
"from": "immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model.state"
},
{
"to": [
"visualisation.immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model_summary"
],
"from": "immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model.summary"
},
{
"to": [
"visualisation.immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model_species_labels"
],
"from": "immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model.species_labels"
}
],
"package": "zhou2015-circadian-clock-with-immune-regulator-npr1",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"version": "1.0.0",
"description": "Zhou2015 - Circadian clock with immuneregulator NPR1 Arabidopsis clock model modified fromP2012 (Pokhilko et al., 2013 - BIOMD0000000445 )model to include the master immune regulator NPR1 coupling to. It can be used to explore immune response dynamics and compare pathway-level behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packagezhou2015-circadian-clock-with-immune-regulator-npr1
Created2026-05-15
Updated2026-06-13
immunologysbmlbiomodels_ebifaithfulcuratedvisualisationother