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Source-faithful physiology lab for Cooling, Hunter, Crampin, 2007. Public controls and outputs are mapped to real source symbols for electrophysiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_calcium",
"label": "Initial Calcium",
"maps_to": "physiology_cellml_cooling_hunter_crampin_2007_coolinghuntercrampin2007_model.initial_calcium",
"description": "Initial value for Calcium. Maps to source symbol `Ca`. Units: uM. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"uM"
]
},
{
"name": "initial_inositol_trisphosphate",
"label": "Initial Inositol Trisphosphate",
"maps_to": "physiology_cellml_cooling_hunter_crampin_2007_coolinghuntercrampin2007_model.initial_inositol_trisphosphate",
"description": "Initial value for Inositol Trisphosphate. Maps to source symbol `IP3`. Units: uM. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"uM"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_cooling_hunter_crampin_2007_coolinghuntercrampin2007_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_cooling_hunter_crampin_2007_coolinghuntercrampin2007_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_cooling_hunter_crampin_2007_coolinghuntercrampin2007_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_cooling_hunter_crampin_2007_coolinghuntercrampin2007_model.variable_labels"
},
{
"name": "calcium",
"label": "Calcium",
"maps_to": "physiology_cellml_cooling_hunter_crampin_2007_coolinghuntercrampin2007_model.calcium",
"description": "Calcium. Maps to source symbol `Ca`. Units: uM. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "inositol_trisphosphate",
"label": "Inositol Trisphosphate",
"maps_to": "physiology_cellml_cooling_hunter_crampin_2007_coolinghuntercrampin2007_model.inositol_trisphosphate",
"description": "Inositol Trisphosphate. Maps to source symbol `IP3`. Units: uM. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "all_gd",
"label": "All Gd",
"maps_to": "physiology_cellml_cooling_hunter_crampin_2007_coolinghuntercrampin2007_model.all_gd",
"description": "All Gd. Maps to source symbol `Gd`. Units: per_um2. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "all_gt",
"label": "All Gt",
"maps_to": "physiology_cellml_cooling_hunter_crampin_2007_coolinghuntercrampin2007_model.all_gt",
"description": "All Gt. Maps to source symbol `Gt`. Units: per_um2. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "all_p",
"label": "All P",
"maps_to": "physiology_cellml_cooling_hunter_crampin_2007_coolinghuntercrampin2007_model.all_p",
"description": "All P. Maps to source symbol `P`. Units: per_um2. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "all_pc",
"label": "All Pc",
"maps_to": "physiology_cellml_cooling_hunter_crampin_2007_coolinghuntercrampin2007_model.all_pc",
"description": "All Pc. Maps to source symbol `Pc`. Units: per_um2. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Cooling2007 - Modeling Hypertrophic IP3 Transients Cardiac Myocyte Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_cooling_hunter_crampin_2007_coolinghuntercrampin2007_model",
"parameters": {
"model_path": "data/cooling_hunter_crampin_2007.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_cooling_hunter_crampin_2007_coolinghuntercrampin2007_model_state"
],
"from": "physiology_cellml_cooling_hunter_crampin_2007_coolinghuntercrampin2007_model.state"
},
{
"to": [
"visualisation.physiology_cellml_cooling_hunter_crampin_2007_coolinghuntercrampin2007_model_summary"
],
"from": "physiology_cellml_cooling_hunter_crampin_2007_coolinghuntercrampin2007_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_cooling_hunter_crampin_2007_coolinghuntercrampin2007_model_trajectory"
],
"from": "physiology_cellml_cooling_hunter_crampin_2007_coolinghuntercrampin2007_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_cooling_hunter_crampin_2007_coolinghuntercrampin2007_model_variable_labels"
],
"from": "physiology_cellml_cooling_hunter_crampin_2007_coolinghuntercrampin2007_model.variable_labels"
}
],
"package": "cooling2007-modeling-hypertrophic-ip3-transients-cardiac-myocyte",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.1",
"description": "Source-faithful physiology lab for Cooling, Hunter, Crampin, 2007. Public controls and outputs are mapped to real source symbols for electrophysiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagecooling2007-modeling-hypertrophic-ip3-transients-cardiac-myocyte
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother