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This is the basic model of AMPAR trafficking bistability. It is based on Hayer and Bhalla, PLoS Comput.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_ca_mkii_slash_act_ca_mkii_minus_psd",
"label": "Initial Ca Mkii Slash Act Ca Mkii Minus Psd",
"maps_to": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.initial_ca_mkii_slash_act_ca_mkii_minus_psd",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaMKII_slash_actCaMKII_minus_PSD`."
},
{
"name": "initial_ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_slash_ca_mkii_cplx",
"label": "Initial Ca Mkii Slash Act Ca Mkii Minus Psd Slash Ca Mkii Slash Ca Mkii Cplx",
"maps_to": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.initial_ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_slash_ca_mkii_cplx",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaMKII_slash_actCaMKII_minus_PSD_slash_CaMKII_slash_CaMKII_cplx`."
},
{
"name": "initial_ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_4_sbc_slash_ca_mkii_sbo_4_sbc_cplx",
"label": "Initial Ca Mkii Slash Act Ca Mkii Minus Psd Slash Ca Mkii Sbo 4 Sbc Slash Ca Mkii Sbo 4 Sbc Cplx",
"maps_to": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.initial_ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_4_sbc_slash_ca_mkii_sbo_4_sbc_cplx",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaMKII_slash_actCaMKII_minus_PSD_slash_CaMKII_sbo_4_sbc__slash_CaMKII_sbo_4_sbc__cplx`."
},
{
"name": "initial_ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_8_sbc_slash_ca_mkii_sbo_8_sbc_cplx",
"label": "Initial Ca Mkii Slash Act Ca Mkii Minus Psd Slash Ca Mkii Sbo 8 Sbc Slash Ca Mkii Sbo 8 Sbc Cplx",
"maps_to": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.initial_ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_8_sbc_slash_ca_mkii_sbo_8_sbc_cplx",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaMKII_slash_actCaMKII_minus_PSD_slash_CaMKII_sbo_8_sbc__slash_CaMKII_sbo_8_sbc__cplx`."
},
{
"name": "initial_ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_12_sbc_slash_ca_mkii_sbo_12_sbc_cplx",
"label": "Initial Ca Mkii Slash Act Ca Mkii Minus Psd Slash Ca Mkii Sbo 12 Sbc Slash Ca Mkii Sbo 12 Sbc Cplx",
"maps_to": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.initial_ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_12_sbc_slash_ca_mkii_sbo_12_sbc_cplx",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaMKII_slash_actCaMKII_minus_PSD_slash_CaMKII_sbo_12_sbc__slash_CaMKII_sbo_12_sbc__cplx`."
},
{
"name": "initial_ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_6_sbc_slash_ca_mkii_sbo_6_sbc_cplx",
"label": "Initial Ca Mkii Slash Act Ca Mkii Minus Psd Slash Ca Mkii Sbo 6 Sbc Slash Ca Mkii Sbo 6 Sbc Cplx",
"maps_to": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.initial_ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_6_sbc_slash_ca_mkii_sbo_6_sbc_cplx",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaMKII_slash_actCaMKII_minus_PSD_slash_CaMKII_sbo_6_sbc__slash_CaMKII_sbo_6_sbc__cplx`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.species_labels"
},
{
"name": "ca_mkii_slash_act_ca_mkii_minus_psd",
"maps_to": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.ca_mkii_slash_act_ca_mkii_minus_psd"
},
{
"name": "ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_slash_ca_mkii_cplx",
"maps_to": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_slash_ca_mkii_cplx"
},
{
"name": "ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_4_sbc_slash_ca_mkii_sbo_4_sbc_cplx",
"maps_to": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_4_sbc_slash_ca_mkii_sbo_4_sbc_cplx"
},
{
"name": "ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_8_sbc_slash_ca_mkii_sbo_8_sbc_cplx",
"maps_to": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_8_sbc_slash_ca_mkii_sbo_8_sbc_cplx"
},
{
"name": "ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_12_sbc_slash_ca_mkii_sbo_12_sbc_cplx",
"maps_to": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_12_sbc_slash_ca_mkii_sbo_12_sbc_cplx"
},
{
"name": "ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_6_sbc_slash_ca_mkii_sbo_6_sbc_cplx",
"maps_to": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_6_sbc_slash_ca_mkii_sbo_6_sbc_cplx"
}
]
},
"tags": [
"signaling",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Hayer2005 Ampar Traff 2 Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model_state"
],
"from": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model_summary"
],
"from": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model_species_labels"
],
"from": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.species_labels"
}
],
"package": "hayer2005-ampar-traff-2",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "This is the basic model of AMPAR trafficking bistability. It is based on Hayer and Bhalla, PLoS Comput.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagehayer2005-ampar-traff-2
Created2026-05-17
Updated2026-06-13
signalingsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother