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Bruce Shapiro: Generated by Cellerator Version 1.0 update 3.0303 using Mathematica 4.1 for Microsoft Windows (June 13, 2001), April 2, 2003 16:49:13, using (PC,x86, Microsoft Windows,WindowsNT,Windows. It can be used to explore systemsbiology ueda2001 circclock BioModels0000000022 dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_per_tim_nuc",
"label": "Initial Per Tim Nuc",
"maps_to": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.initial_per_tim_nuc",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PTn`."
},
{
"name": "initial_dbt_cyt",
"label": "Initial Dbt Cyt",
"maps_to": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.initial_dbt_cyt",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_0000013`."
},
{
"name": "initial_cyc_cyt",
"label": "Initial Cyc Cyt",
"maps_to": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.initial_cyc_cyt",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_0000012`."
},
{
"name": "initial_per_tim_cyt",
"label": "Initial Per Tim Cyt",
"maps_to": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.initial_per_tim_cyt",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PTc`."
},
{
"name": "initial_tim_cyt",
"label": "Initial Tim Cyt",
"maps_to": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.initial_tim_cyt",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Timc`."
},
{
"name": "initial_tim_mrna",
"label": "Initial Tim MRNA",
"maps_to": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.initial_tim_mrna",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Timm`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.species_labels"
},
{
"name": "per_tim_nuc",
"maps_to": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.per_tim_nuc"
},
{
"name": "dbt_cyt",
"maps_to": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.dbt_cyt"
},
{
"name": "cyc_cyt",
"maps_to": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.cyc_cyt"
},
{
"name": "per_tim_cyt",
"maps_to": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.per_tim_cyt"
},
{
"name": "tim_cyt",
"maps_to": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.tim_cyt"
},
{
"name": "tim_mrna",
"maps_to": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.tim_mrna"
}
]
},
"tags": [
"generegulation",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Ueda2001 Circclock Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model_state"
],
"from": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model_summary"
],
"from": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model_species_labels"
],
"from": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.species_labels"
}
],
"package": "ueda2001-circclock",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Bruce Shapiro: Generated by Cellerator Version 1.0 update 3.0303 using Mathematica 4.1 for Microsoft Windows (June 13, 2001), April 2, 2003 16:49:13, using (PC,x86, Microsoft Windows,WindowsNT,Windows. It can be used to explore systemsbiology ueda2001 circclock BioModels0000000022 dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packageueda2001-circclock
Created2026-05-17
Updated2026-06-13
generegulationsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother