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Minimal model demonstrating SBML Level 3 packages. It can be used to explore systemsbiology keating2019 minimal demonstrating lev model1904090001 dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_glucose",
"label": "Initial Glucose",
"maps_to": "systemsbiology_sbml_keating2019_minimal_model_demonstrating_sbml_lev_model1904090001_model.initial_glucose",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `glc`."
},
{
"name": "initial_glucose_6_phosphate",
"label": "Initial Glucose 6 Phosphate",
"maps_to": "systemsbiology_sbml_keating2019_minimal_model_demonstrating_sbml_lev_model1904090001_model.initial_glucose_6_phosphate",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `g6p`."
},
{
"name": "initial_model_state_atp",
"label": "Initial Model State ATP",
"maps_to": "systemsbiology_sbml_keating2019_minimal_model_demonstrating_sbml_lev_model1904090001_model.initial_model_state_atp",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `atp`."
},
{
"name": "initial_model_state_adp",
"label": "Initial Model State ADP",
"maps_to": "systemsbiology_sbml_keating2019_minimal_model_demonstrating_sbml_lev_model1904090001_model.initial_model_state_adp",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `adp`."
},
{
"name": "initial_model_state_p",
"label": "Initial Model State P",
"maps_to": "systemsbiology_sbml_keating2019_minimal_model_demonstrating_sbml_lev_model1904090001_model.initial_model_state_p",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `phos`."
},
{
"name": "initial_model_state_h",
"label": "Initial Model State H",
"maps_to": "systemsbiology_sbml_keating2019_minimal_model_demonstrating_sbml_lev_model1904090001_model.initial_model_state_h",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `hydron`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_keating2019_minimal_model_demonstrating_sbml_lev_model1904090001_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_keating2019_minimal_model_demonstrating_sbml_lev_model1904090001_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_keating2019_minimal_model_demonstrating_sbml_lev_model1904090001_model.species_labels"
},
{
"name": "glucose",
"maps_to": "systemsbiology_sbml_keating2019_minimal_model_demonstrating_sbml_lev_model1904090001_model.glucose"
},
{
"name": "glucose_6_phosphate",
"maps_to": "systemsbiology_sbml_keating2019_minimal_model_demonstrating_sbml_lev_model1904090001_model.glucose_6_phosphate"
},
{
"name": "atp",
"maps_to": "systemsbiology_sbml_keating2019_minimal_model_demonstrating_sbml_lev_model1904090001_model.atp"
},
{
"name": "adp",
"maps_to": "systemsbiology_sbml_keating2019_minimal_model_demonstrating_sbml_lev_model1904090001_model.adp"
},
{
"name": "model_state_p",
"maps_to": "systemsbiology_sbml_keating2019_minimal_model_demonstrating_sbml_lev_model1904090001_model.model_state_p"
},
{
"name": "model_state_h",
"maps_to": "systemsbiology_sbml_keating2019_minimal_model_demonstrating_sbml_lev_model1904090001_model.model_state_h"
}
]
},
"tags": [
"cellcycle",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Keating2019 Minimal Model Demonstrating Sbml Level 3 Packages Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_keating2019_minimal_model_demonstrating_sbml_lev_model1904090001_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_keating2019_minimal_model_demonstrating_sbml_lev_model1904090001_model_state"
],
"from": "systemsbiology_sbml_keating2019_minimal_model_demonstrating_sbml_lev_model1904090001_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_keating2019_minimal_model_demonstrating_sbml_lev_model1904090001_model_summary"
],
"from": "systemsbiology_sbml_keating2019_minimal_model_demonstrating_sbml_lev_model1904090001_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_keating2019_minimal_model_demonstrating_sbml_lev_model1904090001_model_species_labels"
],
"from": "systemsbiology_sbml_keating2019_minimal_model_demonstrating_sbml_lev_model1904090001_model.species_labels"
}
],
"package": "keating2019-minimal-model-demonstrating-sbml-level-3-packages",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Minimal model demonstrating SBML Level 3 packages. It can be used to explore systemsbiology keating2019 minimal demonstrating lev model1904090001 dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagekeating2019-minimal-model-demonstrating-sbml-level-3-packages
Created2026-05-17
Updated2026-06-13
cellcyclesystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother