Novak1997 - Tyson Control DNA Replication Fission Yeast Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_intermediary_enzyme",
        "label": "Initial Intermediary Enzyme",
        "maps_to": "physiology_cellml_novak_tyson_1997_novaktyson1997_model.initial_intermediary_enzyme",
        "description": "Initial value for Intermediary Enzyme. Maps to source symbol `IE`. Units: dimensionless. Naming evidence: source metadata names `IE` as `intermediary enzyme`.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_cdc13_cdc2_complex",
        "label": "Initial Cdc13 Cdc2 Complex",
        "maps_to": "physiology_cellml_novak_tyson_1997_novaktyson1997_model.initial_cdc13_cdc2_complex",
        "description": "Initial value for Cdc13 Cdc2 Complex. Maps to source symbol `G2K`. Units: dimensionless. Naming evidence: source metadata names `G2K` as `Cdc13-Cdc2 complex`.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_novak_tyson_1997_novaktyson1997_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_novak_tyson_1997_novaktyson1997_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_novak_tyson_1997_novaktyson1997_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_novak_tyson_1997_novaktyson1997_model.variable_labels"
      },
      {
        "name": "intracellular_potassium",
        "label": "Intracellular Potassium",
        "maps_to": "physiology_cellml_novak_tyson_1997_novaktyson1997_model.intracellular_potassium",
        "description": "Intracellular Potassium. Maps to source symbol `ki`. Units: first_order_rate_constant. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "intermediary_enzyme",
        "label": "Intermediary Enzyme",
        "maps_to": "physiology_cellml_novak_tyson_1997_novaktyson1997_model.intermediary_enzyme",
        "description": "Intermediary Enzyme. Maps to source symbol `IE`. Units: dimensionless. Naming evidence: source metadata names `IE` as `intermediary enzyme`."
      },
      {
        "name": "cdc25",
        "label": "Cdc25",
        "maps_to": "physiology_cellml_novak_tyson_1997_novaktyson1997_model.cdc25",
        "description": "Cdc25. Maps to source symbol `Cdc25`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "cig2_cdc2_complex",
        "label": "Cig2 Cdc2 Complex",
        "maps_to": "physiology_cellml_novak_tyson_1997_novaktyson1997_model.cig2_cdc2_complex",
        "description": "Cig2 Cdc2 Complex. Maps to source symbol `G1K`. Units: dimensionless. Naming evidence: source metadata names `G1K` as `Cig2-Cdc2 complex`."
      },
      {
        "name": "cig2_cdc2_rum1_complex",
        "label": "Cig2 Cdc2 Rum1 Complex",
        "maps_to": "physiology_cellml_novak_tyson_1997_novaktyson1997_model.cig2_cdc2_rum1_complex",
        "description": "Cig2 Cdc2 Rum1 Complex. Maps to source symbol `G1R`. Units: dimensionless. Naming evidence: source metadata names `G1R` as `Cig2-Cdc2-Rum1 complex`."
      },
      {
        "name": "rum1",
        "label": "Rum1",
        "maps_to": "physiology_cellml_novak_tyson_1997_novaktyson1997_model.rum1",
        "description": "Rum1. Maps to source symbol `R`. Units: dimensionless. Naming evidence: source metadata names `R` as `Rum1`."
      }
    ]
  },
  "title": "Novak1997 - Tyson Control DNA Replication Fission Yeast Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "physiology_cellml_novak_tyson_1997_novaktyson1997_model",
      "parameters": {
        "model_path": "data/novak_tyson_1997.cellml",
        "integration_step": 0.01
      }
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_novak_tyson_1997_novaktyson1997_model_state"
      ],
      "from": "physiology_cellml_novak_tyson_1997_novaktyson1997_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_novak_tyson_1997_novaktyson1997_model_summary"
      ],
      "from": "physiology_cellml_novak_tyson_1997_novaktyson1997_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_novak_tyson_1997_novaktyson1997_model_trajectory"
      ],
      "from": "physiology_cellml_novak_tyson_1997_novaktyson1997_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_novak_tyson_1997_novaktyson1997_model_variable_labels"
      ],
      "from": "physiology_cellml_novak_tyson_1997_novaktyson1997_model.variable_labels"
    }
  ],
  "package": "novak1997-tyson-control-dna-replication-fission-yeast",
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "version": "1.0.0",
  "description": "Source-faithful physiology lab for Novak, Tyson, 1997. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}