About lab
One published Lab
Build with this Lab. Run it anywhere.
Use the same immutable release locally or through managed cloud execution, with its exact version and provenance preserved.
Preparing exact examples…
This a model from the article: Role of individual ionic current systems in the SA node hypothesized by a modelstudy. Sarai N, Matsuoka S, Kuratomi S, Ono K, Noma A.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_at_pi",
"label": "Initial At Pi",
"maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.initial_at_pi",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ATPi`."
},
{
"name": "initial_ca_total_internal_ion_concentrations",
"label": "Initial Ca Total Internal Ion Concentrations",
"maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.initial_ca_total_internal_ion_concentrations",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Ca_Total_internal_ion_concentrations`."
},
{
"name": "initial_y3_st_channel_y3_gate",
"label": "Initial Y3 St Channel Y3 Gate",
"maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.initial_y3_st_channel_y3_gate",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `y3_st_channel_y3_gate`."
},
{
"name": "initial_y2_st_channel_y2_gate",
"label": "Initial Y2 St Channel Y2 Gate",
"maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.initial_y2_st_channel_y2_gate",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `y2_st_channel_y2_gate`."
},
{
"name": "initial_y1_st_channel_y1_gate",
"label": "Initial Y1 St Channel Y1 Gate",
"maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.initial_y1_st_channel_y1_gate",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `y1_st_channel_y1_gate`."
},
{
"name": "initial_y_sr_calcium_pump_y_gate",
"label": "Initial Y Sr Calcium Pump Y Gate",
"maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.initial_y_sr_calcium_pump_y_gate",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `y_SR_calcium_pump_y_gate`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.species_labels"
},
{
"name": "at_pi",
"maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.at_pi"
},
{
"name": "ca_total_internal_ion_concentrations",
"maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.ca_total_internal_ion_concentrations"
},
{
"name": "y3_st_channel_y3_gate",
"maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.y3_st_channel_y3_gate"
},
{
"name": "y2_st_channel_y2_gate",
"maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.y2_st_channel_y2_gate"
},
{
"name": "y1_st_channel_y1_gate",
"maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.y1_st_channel_y1_gate"
},
{
"name": "y_sr_calcium_pump_y_gate",
"maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.y_sr_calcium_pump_y_gate"
}
]
},
"tags": [
"cardiovascular",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Sarai2003 Cardiacsanodepacemaker Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model_state"
],
"from": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model_summary"
],
"from": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model_species_labels"
],
"from": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.species_labels"
}
],
"package": "sarai2003-cardiacsanodepacemaker",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "This a model from the article: Role of individual ionic current systems in the SA node hypothesized by a modelstudy. Sarai N, Matsuoka S, Kuratomi S, Ono K, Noma A.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagesarai2003-cardiacsanodepacemaker
Created2026-05-17
Updated2026-06-13
cardiovascularsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother