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Single-model lab wrapper for Westerhoff2020 - systems biology model of the coronavirus pandemic 2020. Using standard systems biology methodologies a 14-compartment dynamic model was developed for the Corona virus epidemic. The model predicts that: (i) it will be impossible to limit lockdown intensity.
Manifest
{
"io": {
"inputs": [
{
"name": "social_distance",
"label": "Social Distance",
"maps_to": "epidemiology_sbml_westerhoff2020_systems_biology_model_of_the_coro_biomd0000000988_model.social_distance"
},
{
"name": "lockdown_severity",
"label": "Lockdown Severity",
"maps_to": "epidemiology_sbml_westerhoff2020_systems_biology_model_of_the_coro_biomd0000000988_model.lockdown_severity"
},
{
"name": "random_testing_rate",
"label": "Random Testing Rate",
"maps_to": "epidemiology_sbml_westerhoff2020_systems_biology_model_of_the_coro_biomd0000000988_model.random_testing_rate"
},
{
"name": "symptom_testing_rate",
"label": "Symptom Testing Rate",
"maps_to": "epidemiology_sbml_westerhoff2020_systems_biology_model_of_the_coro_biomd0000000988_model.symptom_testing_rate"
}
],
"outputs": [
{
"name": "state",
"label": "Model state",
"maps_to": "epidemiology_sbml_westerhoff2020_systems_biology_model_of_the_coro_biomd0000000988_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "epidemiology_sbml_westerhoff2020_systems_biology_model_of_the_coro_biomd0000000988_model.summary"
},
{
"name": "species_labels",
"label": "Species labels",
"maps_to": "epidemiology_sbml_westerhoff2020_systems_biology_model_of_the_coro_biomd0000000988_model.species_labels"
},
{
"name": "uninfected_tested",
"label": "Uninfected tested",
"maps_to": "epidemiology_sbml_westerhoff2020_systems_biology_model_of_the_coro_biomd0000000988_model.uninfected_tested"
},
{
"name": "uninfected_nontested",
"label": "Uninfected nontested",
"maps_to": "epidemiology_sbml_westerhoff2020_systems_biology_model_of_the_coro_biomd0000000988_model.uninfected_nontested"
},
{
"name": "infected_tested",
"label": "Infected tested",
"maps_to": "epidemiology_sbml_westerhoff2020_systems_biology_model_of_the_coro_biomd0000000988_model.infected_tested"
},
{
"name": "infected_nontested",
"label": "Infected nontested",
"maps_to": "epidemiology_sbml_westerhoff2020_systems_biology_model_of_the_coro_biomd0000000988_model.infected_nontested"
},
{
"name": "infected_tested_div10",
"label": "Infected tested div10",
"maps_to": "epidemiology_sbml_westerhoff2020_systems_biology_model_of_the_coro_biomd0000000988_model.infected_tested_div10"
},
{
"name": "dead_corona_tested",
"label": "Dead corona tested",
"maps_to": "epidemiology_sbml_westerhoff2020_systems_biology_model_of_the_coro_biomd0000000988_model.dead_corona_tested"
},
{
"name": "dead_corona_nontested",
"label": "Dead corona nontested",
"maps_to": "epidemiology_sbml_westerhoff2020_systems_biology_model_of_the_coro_biomd0000000988_model.dead_corona_nontested"
},
{
"name": "recovered_tested",
"label": "Recovered tested",
"maps_to": "epidemiology_sbml_westerhoff2020_systems_biology_model_of_the_coro_biomd0000000988_model.recovered_tested"
}
]
},
"title": "Westerhoff2020 - systems biology model of the coronavirus pandemic 2020 Lab",
"models": [
{
"path": "models/core",
"alias": "epidemiology_sbml_westerhoff2020_systems_biology_model_of_the_coro_biomd0000000988_model",
"parameters": {
"model_path": "data/BIOMD0000000988.xml",
"integration_step": 0.1
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.epidemiology_sbml_westerhoff2020_systems_biology_model_of_the_coro_biomd0000000988_model_state"
],
"from": "epidemiology_sbml_westerhoff2020_systems_biology_model_of_the_coro_biomd0000000988_model.state"
},
{
"to": [
"visualisation.epidemiology_sbml_westerhoff2020_systems_biology_model_of_the_coro_biomd0000000988_model_summary"
],
"from": "epidemiology_sbml_westerhoff2020_systems_biology_model_of_the_coro_biomd0000000988_model.summary"
},
{
"to": [
"visualisation.epidemiology_sbml_westerhoff2020_systems_biology_model_of_the_coro_biomd0000000988_model_species_labels"
],
"from": "epidemiology_sbml_westerhoff2020_systems_biology_model_of_the_coro_biomd0000000988_model.species_labels"
}
],
"package": "westerhoff2020-coronavirus-testing-lockdown",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Single-model lab wrapper for Westerhoff2020 - systems biology model of the coronavirus pandemic 2020. Using standard systems biology methodologies a 14-compartment dynamic model was developed for the Corona virus epidemic. The model predicts that: (i) it will be impossible to limit lockdown intensity.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagewesterhoff2020-coronavirus-testing-lockdown
Created2026-05-15
Updated2026-06-13
biomodels_ebicuratedepidemiologyfaithfulsbmltelluriumvisualisationother