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Murphy2016 - Differences in predictions ofODE models of tumor growth Comparison of 7 ODE models for tumoursize. This models have been compared to experimental data.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_exponential_tumor_volume",
"label": "Exponential Tumor Volume",
"units": "native SBML value",
"default": 220,
"maps_to": "oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model.initial_exponential_tumor_volume",
"description": "Initial Exponential Tumor Volume. Sets the initial value of bundled SBML symbol `V_exp`."
},
{
"name": "initial_logistic_tumor_volume",
"label": "Logistic Tumor Volume",
"units": "native SBML value",
"default": 220,
"maps_to": "oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model.initial_logistic_tumor_volume",
"description": "Initial Logistic Tumor Volume. Sets the initial value of bundled SBML symbol `V_log`."
},
{
"name": "initial_gompertz_tumor_volume",
"label": "Gompertz Tumor Volume",
"units": "native SBML value",
"default": 220,
"maps_to": "oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model.initial_gompertz_tumor_volume",
"description": "Initial Gompertz Tumor Volume. Sets the initial value of bundled SBML symbol `V_gomp`."
}
],
"outputs": [
{
"name": "v_exp",
"maps_to": "oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model.v_exp",
"description": "V exp observable. Maps to SBML symbol `V_exp`."
},
{
"name": "v_mend",
"maps_to": "oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model.v_mend",
"description": "V mend observable. Maps to SBML symbol `V_mend`."
},
{
"name": "v_log",
"maps_to": "oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model.v_log",
"description": "V log observable. Maps to SBML symbol `V_log`."
},
{
"name": "v_lin",
"maps_to": "oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model.v_lin",
"description": "V lin observable. Maps to SBML symbol `V_lin`."
},
{
"name": "v_surf",
"maps_to": "oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model.v_surf",
"description": "V surf observable. Maps to SBML symbol `V_surf`."
},
{
"name": "v_gomp",
"maps_to": "oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model.v_gomp",
"description": "V gomp observable. Maps to SBML symbol `V_gomp`."
},
{
"name": "state",
"maps_to": "oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model.state",
"description": "Full raw SBML observable record for reproducibility and downstream visualisation."
},
{
"name": "summary",
"maps_to": "oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model.summary",
"description": "Change and peak summary across the simulated SBML observables."
},
{
"name": "species_labels",
"maps_to": "oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model.species_labels",
"description": "Mapping from selected raw SBML observable symbols to display labels."
}
]
},
"tags": [
"biomodels_ebi",
"curated",
"faithful",
"oncology",
"physiology",
"sbml",
"systemsbiology",
"tumor-growth"
],
"title": "Murphy2016 - Differences in predictions of ODE models of tumor growth Lab",
"models": [
{
"path": "models/core",
"alias": "oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model_state"
],
"from": "oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model.state"
},
{
"to": [
"visualisation.oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model_summary"
],
"from": "oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model.summary"
},
{
"to": [
"visualisation.oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model_species_labels"
],
"from": "oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model.species_labels"
}
],
"package": "murphy2016-differences-in-predictions-of-ode-models-of-a5a2187d",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"version": "1.0.0",
"description": "Murphy2016 - Differences in predictions ofODE models of tumor growth Comparison of 7 ODE models for tumoursize. This models have been compared to experimental data.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packagemurphy2016-differences-in-predictions-of-ode-models-of-a5a2187d
Created2026-05-16
Updated2026-06-13
biomodels_ebicuratedfaithfuloncologyphysiologysbmlsystemsbiologytumor-growthvisualisationother