Beard2005 - Mitochondrial Oxidative Phosphorylation Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_oxygen",
        "label": "Initial Oxygen",
        "maps_to": "physiology_cellml_beard_2005_beard2005_model.initial_oxygen",
        "description": "Initial value for Oxygen. Maps to source symbol `O2`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "molar"
        ]
      },
      {
        "name": "initial_atp_i",
        "label": "Initial ATP I",
        "maps_to": "physiology_cellml_beard_2005_beard2005_model.initial_atp_i",
        "description": "Initial value for ATP I. Maps to source symbol `ATP_i`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "molar"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_beard_2005_beard2005_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_beard_2005_beard2005_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_beard_2005_beard2005_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_beard_2005_beard2005_model.variable_labels"
      },
      {
        "name": "oxygen",
        "label": "Oxygen",
        "maps_to": "physiology_cellml_beard_2005_beard2005_model.oxygen",
        "description": "Oxygen. Maps to source symbol `O2`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "atp_i",
        "label": "ATP I",
        "maps_to": "physiology_cellml_beard_2005_beard2005_model.atp_i",
        "description": "ATP I. Maps to source symbol `ATP_i`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "atp_mi",
        "label": "ATP Mi",
        "maps_to": "physiology_cellml_beard_2005_beard2005_model.atp_mi",
        "description": "ATP Mi. Maps to source symbol `ATP_mi`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "atp_mx",
        "label": "ATP Mx",
        "maps_to": "physiology_cellml_beard_2005_beard2005_model.atp_mx",
        "description": "ATP Mx. Maps to source symbol `ATP_mx`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "atp_x",
        "label": "ATP X",
        "maps_to": "physiology_cellml_beard_2005_beard2005_model.atp_x",
        "description": "ATP X. Maps to source symbol `ATP_x`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "adp_i",
        "label": "ADP I",
        "maps_to": "physiology_cellml_beard_2005_beard2005_model.adp_i",
        "description": "ADP I. Maps to source symbol `ADP_i`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Beard2005 - Mitochondrial Oxidative Phosphorylation Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "physiology_cellml_beard_2005_beard2005_model",
      "parameters": {
        "model_path": "data/beard_2005.cellml",
        "integration_step": 0.01
      }
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_beard_2005_beard2005_model_state"
      ],
      "from": "physiology_cellml_beard_2005_beard2005_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_beard_2005_beard2005_model_summary"
      ],
      "from": "physiology_cellml_beard_2005_beard2005_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_beard_2005_beard2005_model_trajectory"
      ],
      "from": "physiology_cellml_beard_2005_beard2005_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_beard_2005_beard2005_model_variable_labels"
      ],
      "from": "physiology_cellml_beard_2005_beard2005_model.variable_labels"
    }
  ],
  "package": "beard2005-mitochondrial-oxidative-phosphorylation",
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "version": "1.0.0",
  "description": "Source-faithful physiology lab for Beard, 2005. Public controls and outputs are mapped to real source symbols for respiratory physiology.",
  "schema_version": "2.0"
}