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Proctor2008 - p53/Mdm2 circuit - p53 stabilisation by ATM This model is described in the article: Explaining oscillations and variability in the p53-Mdm2 system. It can be used to explore systemsbiology proctor2008 p53 mdm2 circuit p53 dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_p53_mrna",
"label": "Initial P53 MRNA",
"maps_to": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stabilisation_b_biomd0000000188_model.initial_p53_mrna",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `p53_mRNA`."
},
{
"name": "initial_mdm2_mrna",
"label": "Initial Mdm2 MRNA",
"maps_to": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stabilisation_b_biomd0000000188_model.initial_mdm2_mrna",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Mdm2_mRNA`."
},
{
"name": "initial_atmi",
"label": "Initial Atmi",
"maps_to": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stabilisation_b_biomd0000000188_model.initial_atmi",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ATMI`."
},
{
"name": "initial_mdm2_p53",
"label": "Initial Mdm2 P53",
"maps_to": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stabilisation_b_biomd0000000188_model.initial_mdm2_p53",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Mdm2_p53`."
},
{
"name": "initial_model_state_p53",
"label": "Initial Model State P53",
"maps_to": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stabilisation_b_biomd0000000188_model.initial_model_state_p53",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `p53`."
},
{
"name": "initial_mdm2",
"label": "Initial Mdm2",
"maps_to": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stabilisation_b_biomd0000000188_model.initial_mdm2",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Mdm2`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stabilisation_b_biomd0000000188_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stabilisation_b_biomd0000000188_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stabilisation_b_biomd0000000188_model.species_labels"
},
{
"name": "p53_mrna",
"maps_to": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stabilisation_b_biomd0000000188_model.p53_mrna"
},
{
"name": "mdm2_mrna",
"maps_to": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stabilisation_b_biomd0000000188_model.mdm2_mrna"
},
{
"name": "atmi",
"maps_to": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stabilisation_b_biomd0000000188_model.atmi"
},
{
"name": "mdm2_p53",
"maps_to": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stabilisation_b_biomd0000000188_model.mdm2_p53"
},
{
"name": "p53",
"maps_to": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stabilisation_b_biomd0000000188_model.p53"
},
{
"name": "mdm2",
"maps_to": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stabilisation_b_biomd0000000188_model.mdm2"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Proctor2008 P53 Mdm2 Circuit P53 Stabilisation By Atm Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stabilisation_b_biomd0000000188_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stabilisation_b_biomd0000000188_model_state"
],
"from": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stabilisation_b_biomd0000000188_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stabilisation_b_biomd0000000188_model_summary"
],
"from": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stabilisation_b_biomd0000000188_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stabilisation_b_biomd0000000188_model_species_labels"
],
"from": "systemsbiology_sbml_proctor2008_p53_mdm2_circuit_p53_stabilisation_b_biomd0000000188_model.species_labels"
}
],
"package": "proctor2008-p53-mdm2-circuit-p53-stabilisation-by-atm",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Proctor2008 - p53/Mdm2 circuit - p53 stabilisation by ATM This model is described in the article: Explaining oscillations and variability in the p53-Mdm2 system. It can be used to explore systemsbiology proctor2008 p53 mdm2 circuit p53 dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packageproctor2008-p53-mdm2-circuit-p53-stabilisation-by-atm
Created2026-05-17
Updated2026-06-13
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother