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yeast cyclin B2/B3 expression. Modeling of the expression of cyclin B2 and B3 in the budding yeast cell cycle. It can be used to explore generegulation linke2017 synchronization of cyclins expression dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [],
"outputs": [
{
"name": "sic1",
"maps_to": "linke2017_cyclin_expression.sic1"
},
{
"name": "cdk1_clb5_or_clb6",
"maps_to": "linke2017_cyclin_expression.cdk1_clb5_or_clb6"
},
{
"name": "cdk1_clb3_or_clb4",
"maps_to": "linke2017_cyclin_expression.cdk1_clb3_or_clb4"
},
{
"name": "cdk1_clb1_or_clb2",
"maps_to": "linke2017_cyclin_expression.cdk1_clb1_or_clb2"
},
{
"name": "state",
"maps_to": "linke2017_cyclin_expression.state"
},
{
"name": "summary",
"maps_to": "linke2017_cyclin_expression.summary"
},
{
"name": "species_labels",
"maps_to": "linke2017_cyclin_expression.species_labels"
}
]
},
"title": "Linke2017 Cyclin Expression Lab",
"models": [
{
"path": "models/core",
"alias": "linke2017_cyclin_expression",
"parameters": {
"model_path": "data/BIOMD0000000934.xml",
"integration_step": 0.1
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.linke2017_cyclin_expression_sic1"
],
"from": "linke2017_cyclin_expression.sic1"
},
{
"to": [
"visualisation.linke2017_cyclin_expression_cdk1_clb5_or_clb6"
],
"from": "linke2017_cyclin_expression.cdk1_clb5_or_clb6"
},
{
"to": [
"visualisation.linke2017_cyclin_expression_cdk1_clb3_or_clb4"
],
"from": "linke2017_cyclin_expression.cdk1_clb3_or_clb4"
},
{
"to": [
"visualisation.linke2017_cyclin_expression_cdk1_clb1_or_clb2"
],
"from": "linke2017_cyclin_expression.cdk1_clb1_or_clb2"
},
{
"to": [
"visualisation.linke2017_cyclin_expression_state"
],
"from": "linke2017_cyclin_expression.state"
},
{
"to": [
"visualisation.linke2017_cyclin_expression_summary"
],
"from": "linke2017_cyclin_expression.summary"
},
{
"to": [
"visualisation.linke2017_cyclin_expression_species_labels"
],
"from": "linke2017_cyclin_expression.species_labels"
}
],
"package": "linke2017-cyclin-expression",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"version": "1.0.1",
"description": "yeast cyclin B2/B3 expression. Modeling of the expression of cyclin B2 and B3 in the budding yeast cell cycle. It can be used to explore generegulation linke2017 synchronization of cyclins expression dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packagelinke2017-cyclin-expression
Created2026-05-15
Updated2026-06-13
generegulationsbmlbiomodels_ebifaithfulvisualisationother